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    AFF3 ALF transcription elongation factor 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714408, updated on 17-Aug-2024

    Summary

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    Official Symbol
    AFF3provided by VGNC
    Official Full Name
    ALF transcription elongation factor 3provided by VGNC
    Primary source
    VGNC:VGNC:97731
    See related
    Ensembl:ENSMMUG00000022836
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See AFF3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (3359896..3939581, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (94806590..94917124, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene REV1 DNA directed polymerase Neighboring gene 60S ribosomal protein L36a-like Neighboring gene uncharacterized LOC114671868 Neighboring gene uncharacterized LOC106993086 Neighboring gene uncharacterized LOC114671869 Neighboring gene uncharacterized LOC106993087

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of super elongation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AF4/FMR2 family member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      3359896..3939581 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028832236.1 → XP_028688069.1  AF4/FMR2 family member 3 isoform X1

      UniProtKB/TrEMBL
      H9Z8T8
      Related
      ENSMMUP00000062175.1, ENSMMUT00000097077.1
      Conserved Domains (2) summary
      pfam05110
      Location:45 → 497
      AF-4; AF-4 proto-oncoprotein
      pfam18876
      Location:989 → 1249
      AF-4_C; AF-4 proto-oncoprotein C-terminal region

    2. XM_028832237.1 → XP_028688070.1  AF4/FMR2 family member 3 isoform X2

      UniProtKB/TrEMBL
      H9Z8T8
      Conserved Domains (1) summary
      pfam05110
      Location:31 → 1227
      AF-4; AF-4 proto-oncoprotein
    Nucleotide Protein
    Heading Accession and Version

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