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    CPSF3 cleavage and polyadenylation specific factor 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694036, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CPSF3provided by VGNC
    Official Full Name
    cleavage and polyadenylation specific factor 3provided by VGNC
    Primary source
    VGNC:VGNC:106142
    See related
    Ensembl:ENSMMUG00000018038
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CPSF3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (99296466..99347788, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (9411306..9462807)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene ADAM metallopeptidase domain 17 Neighboring gene isoamyl acetate hydrolyzing esterase 1 (putative) Neighboring gene integrin subunit beta 1 binding protein 1 Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 Neighboring gene uncharacterized LOC114671777

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-3' exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specificity factor subunit 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      99296466..99347788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015111667.2 → XP_014967153.1  cleavage and polyadenylation specificity factor subunit 3 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QK71, G7NB91, H9FVQ3
      Related
      ENSMMUP00000048444.2, ENSMMUT00000057243.2
      Conserved Domains (3) summary
      COG1236
      Location:14 → 454
      YSH1; RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
      cd16292
      Location:12 → 205
      CPSF3-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 3 and related proteins; MBL-fold metallo-hydrolase domain
      pfam11718
      Location:479 → 682
      CPSF73-100_C; Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term

    2. XM_028831981.1 → XP_028687814.1  cleavage and polyadenylation specificity factor subunit 3 isoform X2

      Conserved Domains (2) summary
      COG1236
      Location:18 → 315
      YSH1; RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
      pfam11718
      Location:340 → 543
      CPSF73-100_C; Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term

    RNA

    1. XR_001438913.2 RNA Sequence

    2. XR_003721886.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials