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    YTHDC1 YTH N6-methyladenosine RNA binding protein C1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709717, updated on 17-Aug-2024

    Summary

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    Official Symbol
    YTHDC1provided by VGNC
    Official Full Name
    YTH N6-methyladenosine RNA binding protein C1provided by VGNC
    Primary source
    VGNC:VGNC:79860
    Locus tag
    EGK_15843
    See related
    Ensembl:ENSMMUG00000002265
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See YTHDC1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (65232738..65268989)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (65983578..66019766)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene transmembrane serine protease 11E Neighboring gene 40S ribosomal protein S28 pseudogene Neighboring gene uncharacterized LOC114678337 Neighboring gene MICOS complex subunit MIC26 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N6-methyladenosine-containing RNA reader activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    YTH domain-containing protein 1
    Names
    Putative splicing factor YT521
    YTH domain containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      65232738..65268989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028848546.1 → XP_028704379.1  YTH domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5QQM9, A0A5F7ZW79
      Related
      ENSMMUP00000069882.1, ENSMMUT00000085480.1
      Conserved Domains (1) summary
      cd21134
      Location:306 → 442
      YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

    2. XM_015138613.2 → XP_014994099.1  YTH domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F7BA90
      Conserved Domains (1) summary
      cd21134
      Location:357 → 493
      YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

    3. XM_001098270.4 → XP_001098270.3  YTH domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A5K1UUP9, F7BA90
      Related
      ENSMMUP00000003025.4, ENSMMUT00000003205.4
      Conserved Domains (1) summary
      cd21134
      Location:357 → 493
      YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

    4. XM_015138614.2 → XP_014994100.1  YTH domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      F7BA90
      Conserved Domains (1) summary
      cd21134
      Location:339 → 475
      YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

    5. XM_002804099.3 → XP_002804145.2  YTH domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5R5S6, F7BA90, I2CYY0
      Related
      ENSMMUP00000055664.2, ENSMMUT00000073543.2
      Conserved Domains (1) summary
      cd21134
      Location:339 → 475
      YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily
    Nucleotide Protein
    Heading Accession and Version

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