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    HPCAL1 hippocalcin like 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 695395, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HPCAL1provided by VGNC
    Official Full Name
    hippocalcin like 1provided by VGNC
    Primary source
    VGNC:VGNC:73510
    See related
    Ensembl:ENSMMUG00000020440
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human all
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    Genomic context

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    See HPCAL1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (98332973..98456427, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (10308489..10427928)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671773 Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene ornithine decarboxylase 1 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene uncharacterized LOC114671774

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hippocalcin-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260988.1 → NP_001247917.1  hippocalcin-like protein 1

      See identical proteins and their annotated locations for NP_001247917.1

      Status: PROVISIONAL

      Source sequence(s)
      JV046923
      UniProtKB/TrEMBL
      G7NB99, I0FRB8
      Related
      ENSMMUP00000079314.1, ENSMMUT00000104182.1
      Conserved Domains (1) summary
      COG5126
      Location:13 → 179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      98332973..98456427 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028831430.1 → XP_028687263.1  hippocalcin-like protein 1 isoform X1

      UniProtKB/TrEMBL
      G7NB99, I0FRB8
      Conserved Domains (1) summary
      COG5126
      Location:13 → 179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    2. XM_028831431.1 → XP_028687264.1  hippocalcin-like protein 1 isoform X1

      UniProtKB/TrEMBL
      G7NB99, I0FRB8
      Conserved Domains (1) summary
      COG5126
      Location:13 → 179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    3. XM_028831429.1 → XP_028687262.1  hippocalcin-like protein 1 isoform X1

      UniProtKB/TrEMBL
      G7NB99, I0FRB8
      Conserved Domains (1) summary
      COG5126
      Location:13 → 179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    4. XM_015111638.2 → XP_014967124.1  hippocalcin-like protein 1 isoform X1

      UniProtKB/TrEMBL
      G7NB99, I0FRB8
      Related
      ENSMMUP00000070705.1, ENSMMUT00000087513.1
      Conserved Domains (1) summary
      COG5126
      Location:13 → 179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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