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    TNRC6C trinucleotide repeat containing adaptor 6C [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714829, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TNRC6Cprovided by VGNC
    Official Full Name
    trinucleotide repeat containing adaptor 6Cprovided by VGNC
    Primary source
    VGNC:VGNC:79800
    See related
    Ensembl:ENSMMUG00000011924
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TNRC6C in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (74319982..74477091)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (71842284..71925434)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106994142 Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC114673194 Neighboring gene U6 spliceosomal RNA Neighboring gene transmembrane channel like 6 Neighboring gene transmembrane channel like 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trinucleotide repeat-containing gene 6C protein
    Names
    trinucleotide repeat containing 6C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260746.1 → NP_001247675.1  trinucleotide repeat-containing gene 6C protein

      See identical proteins and their annotated locations for NP_001247675.1

      Status: PROVISIONAL

      Source sequence(s)
      JU476570
      UniProtKB/TrEMBL
      G7NGZ5, H9FXR3
      Related
      ENSMMUP00000079106.1, ENSMMUT00000108213.1
      Conserved Domains (5) summary
      cd12713
      Location:1548 → 1630
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:937 → 974
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:818 → 934
      Ago_hook; Argonaute hook
      pfam12938
      Location:1016 → 1244
      M_domain; M domain of GW182
      pfam16608
      Location:1254 → 1547
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      74319982..74477091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028835684.1 → XP_028691517.1  trinucleotide repeat-containing gene 6C protein isoform X10

      UniProtKB/TrEMBL
      F7HKT6
      Related
      ENSMMUP00000070968.1, ENSMMUT00000108949.1
      Conserved Domains (6) summary
      cd14283
      Location:1150 → 1187
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1030 → 1153
      Ago_hook; Argonaute hook
      pfam12938
      Location:1238 → 1466
      M_domain; M domain of GW182
      pfam16608
      Location:1475 → 1768
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12713
      Location:1764 → 1851
      RRM_TNRC6C; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      NF033849
      Location:468 → 630
      ser_rich_anae_1; serine-rich protein

    2. XM_028835674.1 → XP_028691507.1  trinucleotide repeat-containing gene 6C protein isoform X1

      UniProtKB/TrEMBL
      F7HKT6
      Conserved Domains (5) summary
      cd12713
      Location:1824 → 1906
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1205 → 1242
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1085 → 1208
      Ago_hook; Argonaute hook
      pfam12938
      Location:1293 → 1521
      M_domain; M domain of GW182
      pfam16608
      Location:1530 → 1823
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    3. XM_028835680.1 → XP_028691513.1  trinucleotide repeat-containing gene 6C protein isoform X6

      UniProtKB/TrEMBL
      F7HKU3
      Conserved Domains (5) summary
      cd12713
      Location:1785 → 1867
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1205 → 1242
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1085 → 1208
      Ago_hook; Argonaute hook
      pfam12938
      Location:1293 → 1521
      M_domain; M domain of GW182
      pfam16608
      Location:1530 → 1784
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    4. XM_028835683.1 → XP_028691516.1  trinucleotide repeat-containing gene 6C protein isoform X9

      UniProtKB/TrEMBL
      F7HKT6
      Conserved Domains (5) summary
      cd12713
      Location:1772 → 1854
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1205 → 1242
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1085 → 1208
      Ago_hook; Argonaute hook
      pfam12938
      Location:1293 → 1521
      M_domain; M domain of GW182
      pfam16608
      Location:1530 → 1771
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    5. XM_028835685.1 → XP_028691518.1  trinucleotide repeat-containing gene 6C protein isoform X11

      UniProtKB/TrEMBL
      A0A5F7ZM10
      Conserved Domains (5) summary
      cd12713
      Location:1768 → 1850
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1205 → 1242
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1085 → 1208
      Ago_hook; Argonaute hook
      pfam12938
      Location:1293 → 1521
      M_domain; M domain of GW182
      pfam16608
      Location:1540 → 1767
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    6. XM_028835687.1 → XP_028691520.1  trinucleotide repeat-containing gene 6C protein isoform X13

      UniProtKB/TrEMBL
      A0A5F7ZM10
      Conserved Domains (5) summary
      cd12713
      Location:1729 → 1811
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1205 → 1242
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1085 → 1208
      Ago_hook; Argonaute hook
      pfam12938
      Location:1293 → 1521
      M_domain; M domain of GW182
      pfam16608
      Location:1540 → 1728
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    7. XM_028835688.1 → XP_028691521.1  trinucleotide repeat-containing gene 6C protein isoform X14

      UniProtKB/TrEMBL
      A0A5F7ZM10
      Conserved Domains (5) summary
      cd12713
      Location:1716 → 1798
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1205 → 1242
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1085 → 1208
      Ago_hook; Argonaute hook
      pfam12938
      Location:1293 → 1521
      M_domain; M domain of GW182
      pfam16608
      Location:1538 → 1715
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    8. XM_028835682.1 → XP_028691515.1  trinucleotide repeat-containing gene 6C protein isoform X8

      UniProtKB/TrEMBL
      F7HKU3
      Conserved Domains (5) summary
      cd12713
      Location:1777 → 1859
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1205 → 1242
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1085 → 1208
      Ago_hook; Argonaute hook
      pfam12938
      Location:1284 → 1513
      M_domain; M domain of GW182
      pfam16608
      Location:1522 → 1776
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    9. XM_028835677.1 → XP_028691510.1  trinucleotide repeat-containing gene 6C protein isoform X4

      UniProtKB/TrEMBL
      F7HKT6
      Conserved Domains (5) summary
      cd12713
      Location:1813 → 1895
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1202 → 1239
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1082 → 1205
      Ago_hook; Argonaute hook
      pfam12938
      Location:1281 → 1510
      M_domain; M domain of GW182
      pfam16608
      Location:1519 → 1812
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    10. XM_028835676.1 → XP_028691509.1  trinucleotide repeat-containing gene 6C protein isoform X3

      UniProtKB/TrEMBL
      F7HKT6
      Conserved Domains (5) summary
      cd12713
      Location:1816 → 1898
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1205 → 1242
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1085 → 1208
      Ago_hook; Argonaute hook
      pfam12938
      Location:1284 → 1513
      M_domain; M domain of GW182
      pfam16608
      Location:1522 → 1815
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    11. XM_028835686.1 → XP_028691519.1  trinucleotide repeat-containing gene 6C protein isoform X12

      UniProtKB/TrEMBL
      A0A5F8A214
      Conserved Domains (5) summary
      cd12713
      Location:1766 → 1848
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1205 → 1242
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1085 → 1208
      Ago_hook; Argonaute hook
      pfam12938
      Location:1286 → 1463
      M_domain; M domain of GW182
      pfam16608
      Location:1472 → 1765
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    12. XM_028835675.1 → XP_028691508.1  trinucleotide repeat-containing gene 6C protein isoform X2

      UniProtKB/TrEMBL
      F7HKT6
      Conserved Domains (5) summary
      cd12713
      Location:1821 → 1903
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1202 → 1239
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1082 → 1205
      Ago_hook; Argonaute hook
      pfam12938
      Location:1290 → 1518
      M_domain; M domain of GW182
      pfam16608
      Location:1527 → 1820
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    13. XM_028835681.1 → XP_028691514.1  trinucleotide repeat-containing gene 6C protein isoform X7

      UniProtKB/TrEMBL
      F7HKU3
      Conserved Domains (5) summary
      cd12713
      Location:1782 → 1864
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1202 → 1239
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1082 → 1205
      Ago_hook; Argonaute hook
      pfam12938
      Location:1290 → 1518
      M_domain; M domain of GW182
      pfam16608
      Location:1527 → 1781
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    14. XM_028835678.1 → XP_028691511.1  trinucleotide repeat-containing gene 6C protein isoform X5

      UniProtKB/TrEMBL
      F7HKT6
      Conserved Domains (5) summary
      cd12713
      Location:1785 → 1867
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1166 → 1203
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1046 → 1169
      Ago_hook; Argonaute hook
      pfam12938
      Location:1254 → 1482
      M_domain; M domain of GW182
      pfam16608
      Location:1491 → 1784
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    15. XM_028835689.1 → XP_028691522.1  trinucleotide repeat-containing gene 6C protein isoform X15

      UniProtKB/TrEMBL
      G7NGZ5
      Conserved Domains (6) summary
      cd14283
      Location:940 → 977
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:820 → 943
      Ago_hook; Argonaute hook
      pfam12938
      Location:1028 → 1256
      M_domain; M domain of GW182
      pfam16608
      Location:1265 → 1558
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12713
      Location:1554 → 1641
      RRM_TNRC6C; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      NF033849
      Location:258 → 420
      ser_rich_anae_1; serine-rich protein
    Nucleotide Protein
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