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    SPDEF SAM pointed domain containing ETS transcription factor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718648, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SPDEFprovided by VGNC
    Official Full Name
    SAM pointed domain containing ETS transcription factorprovided by VGNC
    Primary source
    VGNC:VGNC:104430
    Locus tag
    EGK_14805
    See related
    Ensembl:ENSMMUG00000056340
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SPDEF in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (134943494..134951457)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (35407379..35426686, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene inflammation and lipid regulator with UBA-like and NBR1-like domains Neighboring gene 60S ribosomal protein L7 pseudogene Neighboring gene interferon-induced transmembrane protein 3 pseudogene Neighboring gene protein kinase C and casein kinase substrate in neurons 1 Neighboring gene ribosomal protein S10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAM pointed domain-containing Ets transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      134943494..134951457
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028847660.1 → XP_028703493.1  SAM pointed domain-containing Ets transcription factor

      UniProtKB/TrEMBL
      A0A663DC17, A0A8J8YFB2, F7CP53, G7MRS1
      Related
      ENSMMUP00000010266.4, ENSMMUT00000010942.4
      Conserved Domains (2) summary
      cd08532
      Location:134 → 214
      SAM_PNT-PDEF-like; Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor
      smart00413
      Location:248 → 334
      ETS; erythroblast transformation specific domain
    Nucleotide Protein
    Heading Accession and Version

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