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    PHYKPL 5-phosphohydroxy-L-lysine phospho-lyase [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702302, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PHYKPLprovided by VGNC
    Official Full Name
    5-phosphohydroxy-L-lysine phospho-lyaseprovided by VGNC
    Primary source
    VGNC:VGNC:81495
    See related
    Ensembl:ENSMMUG00000003997
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    AGXT2L2
    Orthologs
    human mouse all
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    Genomic context

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    See PHYKPL in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (175535306..175562553, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (176693978..176720167, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106999057 Neighboring gene germ cell-less 2, spermatogenesis associated Neighboring gene heterogeneous nuclear ribonucleoprotein A/B Neighboring gene collagen type XXIII alpha 1 chain Neighboring gene CDC like kinase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5-phosphohydroxy-L-lysine phospho-lyase
    Names
    alanine--glyoxylate aminotransferase 2-like 2
    NP_001247859.1
    XP_014997044.1
    XP_028704999.1
    XP_028705000.1
    XP_028705001.1
    XP_028705002.1
    XP_028705003.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260930.2 → NP_001247859.1  5-phosphohydroxy-L-lysine phospho-lyase

      See identical proteins and their annotated locations for NP_001247859.1

      Status: PROVISIONAL

      Source sequence(s)
      JU322930
      UniProtKB/TrEMBL
      F6XR52, H9EWC7
      Related
      ENSMMUP00000005330.4, ENSMMUT00000005663.4
      Conserved Domains (2) summary
      cd00610
      Location:30 → 433
      OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...
      COG0160
      Location:12 → 435
      GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      175535306..175562553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028849169.1 → XP_028705002.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X3

      UniProtKB/TrEMBL
      A0A1D5QDS9, F6XR52
      Conserved Domains (1) summary
      PRK06148
      Location:6 → 391
      PRK06148; hypothetical protein; Provisional

    2. XM_028849166.1 → XP_028704999.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X1

      UniProtKB/TrEMBL
      F6XR52
      Conserved Domains (1) summary
      PRK06148
      Location:6 → 433
      PRK06148; hypothetical protein; Provisional

    3. XM_028849168.1 → XP_028705001.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X3

      UniProtKB/TrEMBL
      A0A1D5QDS9, F6XR52
      Related
      ENSMMUP00000046198.2, ENSMMUT00000071094.2
      Conserved Domains (1) summary
      PRK06148
      Location:6 → 391
      PRK06148; hypothetical protein; Provisional

    4. XM_028849170.1 → XP_028705003.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X2

      UniProtKB/TrEMBL
      A0A5F8AD97, G7MUH5
      Conserved Domains (1) summary
      PRK06148
      Location:1 → 392
      PRK06148; hypothetical protein; Provisional

    5. XM_028849167.1 → XP_028705000.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X2

      UniProtKB/TrEMBL
      A0A5F8AD97, G7MUH5
      Related
      ENSMMUP00000074936.1, ENSMMUT00000090574.1
      Conserved Domains (1) summary
      PRK06148
      Location:1 → 392
      PRK06148; hypothetical protein; Provisional

    6. XM_015141558.2 → XP_014997044.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X4

      UniProtKB/TrEMBL
      F6XR52
      Conserved Domains (1) summary
      cd00610
      Location:30 → 360
      OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...

    RNA

    1. XR_003730077.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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