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    PATZ1 POZ/BTB and AT hook containing zinc finger 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718381, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PATZ1provided by VGNC
    Official Full Name
    POZ/BTB and AT hook containing zinc finger 1provided by VGNC
    Primary source
    VGNC:VGNC:97112
    See related
    Ensembl:ENSMMUG00000013911
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PATZ1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (20163247..20184316)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (73202735..73223637, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene developmentally regulated GTP binding protein 1 Neighboring gene uncharacterized LOC718409 Neighboring gene uncharacterized LOC114670373 Neighboring gene uncharacterized LOC114670374 Neighboring gene phosphoinositide-3-kinase interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytokine production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    POZ-, AT hook-, and zinc finger-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      20163247..20184316
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002798338.3 → XP_002798384.3  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F6QCF5, G7N3M9
      Related
      ENSMMUP00000037086.3, ENSMMUT00000044080.3
      Conserved Domains (7) summary
      COG4049
      Location:600 → 635
      COG4049; Uncharacterized protein, contains archaeal-type C2H2 Zn-finger [General function prediction only]
      COG5048
      Location:381 → 518
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:329 → 406
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:357 → 377
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:607 → 628
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam16637
      Location:536 → 604
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      cd18207
      Location:14 → 162
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)

    2. XM_028827827.1 → XP_028683660.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A5K1UY94
      Conserved Domains (6) summary
      COG5048
      Location:369 → 451
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:329 → 406
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:357 → 377
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:369 → 394
      zf-H2C2_2; Zinc-finger double domain
      pfam13912
      Location:442 → 467
      zf-C2H2_6; C2H2-type zinc finger
      cd18207
      Location:14 → 162
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)

    3. XM_028827826.1 → XP_028683659.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A5K1UPF0
      Related
      ENSMMUP00000037085.3, ENSMMUT00000044079.3
      Conserved Domains (9) summary
      COG4049
      Location:554 → 589
      COG4049; Uncharacterized protein, contains archaeal-type C2H2 Zn-finger [General function prediction only]
      COG5048
      Location:381 → 451
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:329 → 406
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:357 → 377
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:561 → 582
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam16637
      Location:492 → 558
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      pfam13465
      Location:369 → 394
      zf-H2C2_2; Zinc-finger double domain
      pfam13912
      Location:442 → 467
      zf-C2H2_6; C2H2-type zinc finger
      cd18207
      Location:14 → 162
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)

    4. XM_028827828.1 → XP_028683661.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5RJ62, A0A5K1UY94
      Related
      ENSMMUP00000060356.2, ENSMMUT00000067450.2
      Conserved Domains (4) summary
      COG5189
      Location:379 → 436
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:357 → 377
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:369 → 394
      zf-H2C2_2; Zinc-finger double domain
      cd18207
      Location:14 → 162
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    Nucleotide Protein
    Heading Accession and Version

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