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    TOM1L1 target of myb1 like 1 membrane trafficking protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710262, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TOM1L1provided by VGNC
    Official Full Name
    target of myb1 like 1 membrane trafficking proteinprovided by VGNC
    Primary source
    VGNC:VGNC:78616
    See related
    Ensembl:ENSMMUG00000010550
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TOM1L1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (41818452..41877122, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (34721314..34780135, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672995 Neighboring gene syntaxin binding protein 4 Neighboring gene uncharacterized LOC114673126 Neighboring gene uncharacterized LOC106993991 Neighboring gene cytochrome c oxidase copper chaperone COX11 Neighboring gene uncharacterized LOC106993993 Neighboring gene ADP-ribosylation factor-like protein 2-binding protein pseudogene Neighboring gene myosin regulatory light chain 12B pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOM1-like protein 1
    Names
    target of myb1-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261224.1 → NP_001248153.1  TOM1-like protein 1

      See identical proteins and their annotated locations for NP_001248153.1

      Status: PROVISIONAL

      Source sequence(s)
      JU332384
      UniProtKB/TrEMBL
      F7D0F3, G7NHP0, H9FND0
      Related
      ENSMMUP00000013829.4, ENSMMUT00000014761.4
      Conserved Domains (2) summary
      cd03565
      Location:14 → 154
      VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
      cd14237
      Location:199 → 290
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      41818452..41877122 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015119219.2 → XP_014974705.1  TOM1-like protein 1 isoform X2

      UniProtKB/TrEMBL
      G7NHP0
      Conserved Domains (2) summary
      cd14237
      Location:122 → 213
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:1 → 73
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    2. XM_015119218.2 → XP_014974704.1  TOM1-like protein 1 isoform X2

      UniProtKB/TrEMBL
      G7NHP0
      Conserved Domains (2) summary
      cd14237
      Location:122 → 213
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:1 → 73
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    3. XM_015119216.2 → XP_014974702.1  TOM1-like protein 1 isoform X2

      UniProtKB/TrEMBL
      G7NHP0
      Conserved Domains (2) summary
      cd14237
      Location:122 → 213
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:1 → 73
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    4. XM_015119213.2 → XP_014974699.1  TOM1-like protein 1 isoform X2

      UniProtKB/TrEMBL
      G7NHP0
      Conserved Domains (2) summary
      cd14237
      Location:122 → 213
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:1 → 73
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    5. XM_028835561.1 → XP_028691394.1  TOM1-like protein 1 isoform X2

      UniProtKB/TrEMBL
      G7NHP0
      Conserved Domains (2) summary
      cd14237
      Location:122 → 213
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:1 → 73
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    6. XM_015119215.2 → XP_014974701.1  TOM1-like protein 1 isoform X1

      UniProtKB/TrEMBL
      G7NHP0
      Conserved Domains (2) summary
      cd14237
      Location:164 → 255
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:1 → 119
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...

    7. XM_015119214.2 → XP_014974700.1  TOM1-like protein 1 isoform X1

      UniProtKB/TrEMBL
      G7NHP0
      Conserved Domains (2) summary
      cd14237
      Location:164 → 255
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:1 → 119
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...

    8. XM_015119221.2 → XP_014974707.1  TOM1-like protein 1 isoform X2

      UniProtKB/TrEMBL
      G7NHP0
      Conserved Domains (2) summary
      cd14237
      Location:122 → 213
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:1 → 73
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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