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    CDH20 cadherin 20 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698968, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CDH20provided by VGNC
    Official Full Name
    cadherin 20provided by VGNC
    Primary source
    VGNC:VGNC:70970
    See related
    Ensembl:ENSMMUG00000001713
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CDH20 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 18 NC_041771.1 (18584477..18808190, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 18 NC_027910.1 (50885154..51108918)

    Chromosome 18 - NC_041771.1Genomic Context describing neighboring genes Neighboring gene U6 snRNA-associated Sm-like protein LSm6 pseudogene Neighboring gene uncharacterized LOC114673804 Neighboring gene uncharacterized LOC114673841 Neighboring gene 60S ribosomal protein L30 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114673781 Neighboring gene uncharacterized LOC114673733

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adherens junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cadherin-20
    Names
    cadherin-20 preproprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041771.1 Reference Mmul_10 Primary Assembly

      Range
      18584477..18808190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015122130.2 → XP_014977616.2  cadherin-20 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XN38, G7NKT4, H9FT71, I2CYK8
      Conserved Domains (3) summary
      cd11304
      Location:394 → 490
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:85 → 163
      CA; Cadherin repeats
      pfam01049
      Location:643 → 794
      Cadherin_C; Cadherin cytoplasmic region

    2. XM_028838184.1 → XP_028694017.1  cadherin-20 isoform X2

      UniProtKB/TrEMBL
      F7FZG1, H9FT71
      Related
      ENSMMUP00000002285.4, ENSMMUT00000002417.4
      Conserved Domains (3) summary
      cd11304
      Location:388 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
      pfam01049
      Location:637 → 788
      Cadherin_C; Cadherin cytoplasmic region

    3. XM_028838185.1 → XP_028694018.1  cadherin-20 isoform X2

      UniProtKB/TrEMBL
      F7FZG1, H9FT71
      Conserved Domains (3) summary
      cd11304
      Location:388 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
      pfam01049
      Location:637 → 788
      Cadherin_C; Cadherin cytoplasmic region
    Nucleotide Protein
    Heading Accession and Version

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