U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SUPT5H SPT5 homolog, DSIF elongation factor subunit [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697337, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SUPT5Hprovided by VGNC
    Official Full Name
    SPT5 homolog, DSIF elongation factor subunitprovided by VGNC
    Primary source
    VGNC:VGNC:78056
    See related
    Ensembl:ENSMMUG00000019372
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SUPT5H in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (38699906..38735575)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (35196341..35231637)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674098 Neighboring gene ribosomal protein S16 Neighboring gene translocase of inner mitochondrial membrane 50 Neighboring gene delta like canonical Notch ligand 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DSIF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription elongation factor SPT5
    Names
    suppressor of Ty 5 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266951.1 → NP_001253880.1  transcription elongation factor SPT5

      See identical proteins and their annotated locations for NP_001253880.1

      Status: PROVISIONAL

      Source sequence(s)
      JU472024
      UniProtKB/TrEMBL
      F6T381, F6XPK2, G7NNL1, H9YYR2
      Related
      ENSMMUP00000031616.2, ENSMMUT00000038515.3
      Conserved Domains (5) summary
      cd09888
      Location:178 → 265
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG5164
      Location:334 → 965
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:276 → 313
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06086
      Location:1028 → 1084
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam11942
      Location:93 → 172
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      38699906..38735575
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015123805.2 → XP_014979291.1  transcription elongation factor SPT5 isoform X1

      UniProtKB/TrEMBL
      F6T381, F6XPK2, G7NNL1, H9YYR2
      Related
      ENSMMUP00000025456.4, ENSMMUT00000027212.4
      Conserved Domains (5) summary
      cd09888
      Location:178 → 265
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG5164
      Location:334 → 965
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:276 → 313
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06086
      Location:1028 → 1084
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam11942
      Location:93 → 172
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

    2. XM_015123807.2 → XP_014979293.1  transcription elongation factor SPT5 isoform X2

      UniProtKB/TrEMBL
      G7NNL1
      Conserved Domains (5) summary
      cd09888
      Location:174 → 261
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG5164
      Location:330 → 961
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:272 → 309
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06086
      Location:1024 → 1080
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam11942
      Location:75 → 168
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

    3. XM_015123806.2 → XP_014979292.1  transcription elongation factor SPT5 isoform X1

      UniProtKB/TrEMBL
      F6T381, F6XPK2, G7NNL1, H9YYR2
      Conserved Domains (5) summary
      cd09888
      Location:178 → 265
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG5164
      Location:334 → 965
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:276 → 313
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06086
      Location:1028 → 1084
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam11942
      Location:93 → 172
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

    4. XM_015123808.2 → XP_014979294.1  transcription elongation factor SPT5 isoform X2

      UniProtKB/TrEMBL
      G7NNL1
      Related
      ENSMMUP00000062167.1, ENSMMUT00000091926.1
      Conserved Domains (5) summary
      cd09888
      Location:174 → 261
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG5164
      Location:330 → 961
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:272 → 309
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06086
      Location:1024 → 1080
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam11942
      Location:75 → 168
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

    5. XM_028838353.1 → XP_028694186.1  transcription elongation factor SPT5 isoform X1

      UniProtKB/TrEMBL
      F6T381, F6XPK2, G7NNL1, H9YYR2
      Conserved Domains (5) summary
      cd09888
      Location:178 → 265
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG5164
      Location:334 → 965
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:276 → 313
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06086
      Location:1028 → 1084
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam11942
      Location:93 → 172
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.