U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    STX5 syntaxin 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718435, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    STX5provided by VGNC
    Official Full Name
    syntaxin 5provided by VGNC
    Primary source
    VGNC:VGNC:78045
    Locus tag
    EGK_06092
    See related
    Ensembl:ENSMMUG00000005280
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    Syntaxin-5
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See STX5 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (11361385..11387231)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (11467218..11497481)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene WD repeat domain 74 Neighboring gene 60S ribosomal protein L9 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene nuclear RNA export factor 1 Neighboring gene transmembrane protein 223 Neighboring gene transmembrane protein 179B

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    syntaxin-5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261004.2 → NP_001247933.1  syntaxin-5

      See identical proteins and their annotated locations for NP_001247933.1

      Status: PROVISIONAL

      Source sequence(s)
      JV045547
      UniProtKB/TrEMBL
      A0A5F8AI92, A0A8J8Y346, G7NCS0, H9Z1T6
      Related
      ENSMMUP00000080979.1, ENSMMUT00000081702.1
      Conserved Domains (3) summary
      COG5325
      Location:182 → 324
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15844
      Location:266 → 338
      SNARE_syntaxin5; SNARE motif of syntaxin 5
      pfam11416
      Location:53 → 74
      Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      11361385..11387231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015113754.2 → XP_014969240.1  syntaxin-5 isoform X2

      UniProtKB/TrEMBL
      A0A5F8ARS9
      Conserved Domains (2) summary
      cd15844
      Location:170 → 242
      SNARE_syntaxin5; SNARE motif of syntaxin 5
      cl26014
      Location:86 → 228
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...

    2. XM_028832854.1 → XP_028688687.1  syntaxin-5 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AI92
      Related
      ENSMMUP00000080103.1, ENSMMUT00000105681.1
      Conserved Domains (3) summary
      COG5325
      Location:128 → 270
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15844
      Location:212 → 284
      SNARE_syntaxin5; SNARE motif of syntaxin 5
      pfam11416
      Location:1 → 18
      Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.