U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RFX5 regulatory factor X5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710369, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RFX5provided by VGNC
    Official Full Name
    regulatory factor X5provided by VGNC
    Primary source
    VGNC:VGNC:106483
    See related
    Ensembl:ENSMMUG00000051126
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RFX5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (99759412..99766472)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (125841567..125848595, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 4 Neighboring gene selenium binding protein 1 Neighboring gene uncharacterized LOC107000895 Neighboring gene phosphatidylinositol 4-kinase beta Neighboring gene zinc finger protein 687 Neighboring gene uncharacterized LOC114670759

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-binding protein RFX5
    Names
    regulatory factor X, 5 (influences HLA class II expression)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266684.2 → NP_001253613.1  DNA-binding protein RFX5

      See identical proteins and their annotated locations for NP_001253613.1

      Status: PROVISIONAL

      Source sequence(s)
      JV047843
      UniProtKB/TrEMBL
      F6XXU4, H9FY30
      Related
      ENSMMUP00000017303.4, ENSMMUT00000018478.4
      Conserved Domains (2) summary
      pfam02257
      Location:90 → 166
      RFX_DNA_binding; RFX DNA-binding domain
      pfam14621
      Location:412 → 618
      RFX5_DNA_bdg; RFX5 DNA-binding domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      99759412..99766472
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028844008.1 → XP_028699841.1  DNA-binding protein RFX5 isoform X1

      Conserved Domains (2) summary
      pfam14621
      Location:461 → 667
      RFX5_DNA_bdg; RFX5 DNA-binding domain
      pfam02257
      Location:139 → 215
      RFX_DNA_binding; RFX DNA-binding domain

    2. XM_015150905.2 → XP_015006391.1  DNA-binding protein RFX5 isoform X2

      UniProtKB/TrEMBL
      F6XXU4, H9FY30
      Related
      ENSMMUP00000070344.1, ENSMMUT00000103903.1
      Conserved Domains (2) summary
      pfam02257
      Location:90 → 166
      RFX_DNA_binding; RFX DNA-binding domain
      pfam14621
      Location:412 → 618
      RFX5_DNA_bdg; RFX5 DNA-binding domain

    3. XM_015150922.2 → XP_015006408.1  DNA-binding protein RFX5 isoform X2

      UniProtKB/TrEMBL
      F6XXU4, H9FY30
      Conserved Domains (2) summary
      pfam02257
      Location:90 → 166
      RFX_DNA_binding; RFX DNA-binding domain
      pfam14621
      Location:412 → 618
      RFX5_DNA_bdg; RFX5 DNA-binding domain

    4. XM_015150887.2 → XP_015006373.1  DNA-binding protein RFX5 isoform X2

      UniProtKB/TrEMBL
      F6XXU4, H9FY30
      Conserved Domains (2) summary
      pfam02257
      Location:90 → 166
      RFX_DNA_binding; RFX DNA-binding domain
      pfam14621
      Location:412 → 618
      RFX5_DNA_bdg; RFX5 DNA-binding domain

    5. XM_015150938.2 → XP_015006424.1  DNA-binding protein RFX5 isoform X2

      UniProtKB/TrEMBL
      F6XXU4, H9FY30
      Conserved Domains (2) summary
      pfam02257
      Location:90 → 166
      RFX_DNA_binding; RFX DNA-binding domain
      pfam14621
      Location:412 → 618
      RFX5_DNA_bdg; RFX5 DNA-binding domain

    6. XM_015150912.2 → XP_015006398.1  DNA-binding protein RFX5 isoform X2

      UniProtKB/TrEMBL
      F6XXU4, H9FY30
      Related
      ENSMMUP00000072291.1, ENSMMUT00000100968.1
      Conserved Domains (2) summary
      pfam02257
      Location:90 → 166
      RFX_DNA_binding; RFX DNA-binding domain
      pfam14621
      Location:412 → 618
      RFX5_DNA_bdg; RFX5 DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.