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    CSPG5 chondroitin sulfate proteoglycan 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711213, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CSPG5provided by VGNC
    Official Full Name
    chondroitin sulfate proteoglycan 5provided by VGNC
    Primary source
    VGNC:VGNC:71526
    See related
    Ensembl:ENSMMUG00000031732
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CSPG5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (103575571..103594864, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (94937374..94953838)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene SREBF chaperone Neighboring gene bolA-like protein 2 pseudogene Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 Neighboring gene DExH-box helicase 30 Neighboring gene microRNA mir-1226

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chondroitin sulfate proteoglycan 5
    Names
    chondroitin sulfate proteoglycan 5 (neuroglycan C)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      103575571..103594864 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028844069.1 → XP_028699902.1  chondroitin sulfate proteoglycan 5 isoform X2

      UniProtKB/TrEMBL
      H9FNX0
      Conserved Domains (2) summary
      pfam06567
      Location:443 → 534
      Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
      pfam06566
      Location:33 → 268
      Chon_Sulph_att; Chondroitin sulphate attachment domain

    2. XM_028844068.1 → XP_028699901.1  chondroitin sulfate proteoglycan 5 isoform X1

      UniProtKB/TrEMBL
      F7BKT3
      Related
      ENSMMUP00000039156.3, ENSMMUT00000046112.3
      Conserved Domains (2) summary
      pfam06567
      Location:443 → 561
      Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
      pfam06566
      Location:33 → 268
      Chon_Sulph_att; Chondroitin sulphate attachment domain

    3. XM_028844070.1 → XP_028699903.1  chondroitin sulfate proteoglycan 5 isoform X3

      Conserved Domains (2) summary
      pfam06566
      Location:1 → 134
      Chon_Sulph_att; Chondroitin sulphate attachment domain
      pfam06567
      Location:309 → 427
      Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
    Nucleotide Protein
    Heading Accession and Version

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