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    SNED1 sushi, nidogen and EGF like domains 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717458, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNED1provided by VGNC
    Official Full Name
    sushi, nidogen and EGF like domains 1provided by VGNC
    Primary source
    VGNC:VGNC:99404
    See related
    Ensembl:ENSMMUG00000004968
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SNED1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (128413263..128502395)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (123838771..123931643)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene mab-21 like 4 Neighboring gene ciliary rootlet coiled-coil, rootletin family member 2 Neighboring gene uncharacterized LOC114671462 Neighboring gene uncharacterized LOC114671463 Neighboring gene mitochondrial transcription termination factor 4 Neighboring gene PAS domain containing serine/threonine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in establishment or maintenance of epithelial cell apical/basal polarity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of protein-containing complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sushi, nidogen and EGF-like domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      128413263..128502395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028831348.1 → XP_028687181.1  sushi, nidogen and EGF-like domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5RH83
      Conserved Domains (5) summary
      smart00539
      Location:104 → 260
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd00054
      Location:311 → 347
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00063
      Location:1134 → 1214
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:938 → 1018
      fn3; Fibronectin type III domain
      pfam00084
      Location:728 → 781
      Sushi; Sushi repeat (SCR repeat)

    2. XM_028831347.1 → XP_028687180.1  sushi, nidogen and EGF-like domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5RH83
      Conserved Domains (5) summary
      smart00539
      Location:104 → 260
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd00054
      Location:311 → 347
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00063
      Location:1169 → 1249
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:973 → 1053
      fn3; Fibronectin type III domain
      pfam00084
      Location:763 → 816
      Sushi; Sushi repeat (SCR repeat)

    3. XM_028831351.1 → XP_028687184.1  sushi, nidogen and EGF-like domain-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      F7C1P3
      Conserved Domains (5) summary
      smart00539
      Location:104 → 260
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd00054
      Location:311 → 347
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00063
      Location:1169 → 1249
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:973 → 1053
      fn3; Fibronectin type III domain
      pfam00084
      Location:763 → 816
      Sushi; Sushi repeat (SCR repeat)

    4. XM_028831349.1 → XP_028687182.1  sushi, nidogen and EGF-like domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5RH83
      Related
      ENSMMUP00000059677.2, ENSMMUT00000059551.2
      Conserved Domains (5) summary
      smart00539
      Location:104 → 260
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd00054
      Location:311 → 347
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00063
      Location:1104 → 1184
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:908 → 988
      fn3; Fibronectin type III domain
      pfam00084
      Location:698 → 751
      Sushi; Sushi repeat (SCR repeat)

    5. XM_028831350.1 → XP_028687183.1  sushi, nidogen and EGF-like domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      F7C1P3
      Conserved Domains (5) summary
      smart00539
      Location:104 → 260
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd00054
      Location:311 → 347
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00063
      Location:1169 → 1249
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:973 → 1053
      fn3; Fibronectin type III domain
      pfam00084
      Location:763 → 816
      Sushi; Sushi repeat (SCR repeat)

    6. XM_015111531.2 → XP_014967017.1  sushi, nidogen and EGF-like domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5RH83
      Conserved Domains (4) summary
      smart00539
      Location:104 → 260
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd00054
      Location:311 → 347
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam00041
      Location:1171 → 1249
      fn3; Fibronectin type III domain
      pfam00084
      Location:763 → 816
      Sushi; Sushi repeat (SCR repeat)

    7. XM_015111530.2 → XP_014967016.1  sushi, nidogen and EGF-like domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5RH83
      Conserved Domains (4) summary
      smart00539
      Location:104 → 260
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd00054
      Location:311 → 347
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam00041
      Location:1171 → 1249
      fn3; Fibronectin type III domain
      pfam00084
      Location:763 → 816
      Sushi; Sushi repeat (SCR repeat)

    8. XM_015111534.2 → XP_014967020.1  sushi, nidogen and EGF-like domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5RH83, F7C1N9
      Related
      ENSMMUP00000006587.4, ENSMMUT00000007007.4
      Conserved Domains (5) summary
      smart00539
      Location:104 → 260
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd00054
      Location:311 → 347
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam00041
      Location:1106 → 1184
      fn3; Fibronectin type III domain
      pfam00084
      Location:698 → 751
      Sushi; Sushi repeat (SCR repeat)
      pfam06247
      Location:468 → 622
      Plasmod_Pvs28; Plasmodium ookinete surface protein Pvs28

    9. XM_028831352.1 → XP_028687185.1  sushi, nidogen and EGF-like domain-containing protein 1 isoform X8

      UniProtKB/TrEMBL
      G7N9D4
      Conserved Domains (5) summary
      cd00054
      Location:105 → 141
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00063
      Location:963 → 1043
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:767 → 847
      fn3; Fibronectin type III domain
      pfam00084
      Location:557 → 610
      Sushi; Sushi repeat (SCR repeat)
      pfam06119
      Location:8 → 50
      NIDO; Nidogen-like

    RNA

    1. XR_003721504.1 RNA Sequence

    2. XR_003721503.1 RNA Sequence

    3. XR_003721502.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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