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    LNX1 ligand of numb-protein X 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697862, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LNX1provided by VGNC
    Official Full Name
    ligand of numb-protein X 1provided by VGNC
    Primary source
    VGNC:VGNC:100242
    See related
    Ensembl:ENSMMUG00000017401
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LNX1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (79992385..80187730)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (81184931..81318221)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678344 Neighboring gene uncharacterized LOC106998392 Neighboring gene COMM domain-containing protein 5 Neighboring gene uncharacterized LOC106998396 Neighboring gene factor interacting with PAPOLA and CPSF1 Neighboring gene sec1 family domain containing 2 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114678345 Neighboring gene RAS like family 11 member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase LNX
    XP_014994178.2
    XP_014994180.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      79992385..80187730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015138692.2 → XP_014994178.2  E3 ubiquitin-protein ligase LNX isoform X1

      UniProtKB/TrEMBL
      F7HS14, G7MTB3
      Related
      ENSMMUP00000022909.4, ENSMMUT00000024475.4
      Conserved Domains (2) summary
      cd00992
      Location:636 → 720
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd16779
      Location:38 → 79
      mRING-HC-C3HC3D_LNX1; Modified RING finger, HC subclass (C3HC3D-type), found in ligand of numb protein X 1 (LNX1)

    2. XM_015138694.2 → XP_014994180.1  E3 ubiquitin-protein ligase LNX isoform X2

      UniProtKB/TrEMBL
      A0A5K1VG78, F7HRY2, H9G0V9
      Related
      ENSMMUP00000063491.1, ENSMMUT00000102113.1
      Conserved Domains (1) summary
      cd00992
      Location:540 → 624
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    Nucleotide Protein
    Heading Accession and Version

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