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    CPSF6 cleavage and polyadenylation specific factor 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718331, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CPSF6provided by VGNC
    Official Full Name
    cleavage and polyadenylation specific factor 6provided by VGNC
    Primary source
    VGNC:VGNC:71401
    See related
    Ensembl:ENSMMUG00000002921
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CPSF6 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (68767639..68802642)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (67991292..68023393)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene carboxypeptidase M Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC114670890 Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like Neighboring gene adenosylhomocysteinase pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA alternative polyadenylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specificity factor subunit 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      68767639..68802642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015152234.2 → XP_015007720.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      UniProtKB/TrEMBL
      G7N7L8
      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    2. XM_001117360.4 → XP_001117360.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

      See identical proteins and their annotated locations for XP_001117360.1

      UniProtKB/TrEMBL
      A0A1D5R0C8, G7N7L8
      Related
      ENSMMUP00000053761.2, ENSMMUT00000074702.2
      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    3. XM_015152235.2 → XP_015007721.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

      UniProtKB/TrEMBL
      F7H1Q9
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    4. XM_015152236.2 → XP_015007722.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

      UniProtKB/TrEMBL
      F7H1Q9, I0FJW8
      Related
      ENSMMUP00000063526.1, ENSMMUT00000096201.1
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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