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    SNCB synuclein beta [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697484, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNCBprovided by VGNC
    Official Full Name
    synuclein betaprovided by VGNC
    Primary source
    VGNC:VGNC:77670
    Locus tag
    EGK_17180
    See related
    Ensembl:ENSMMUG00000000137
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SNCB in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (174078701..174088986, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (175087123..175097447, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene cadherin related family member 2 Neighboring gene G protein regulated inducer of neurite outgrowth 1 Neighboring gene eukaryotic translation initiation factor 4E family member 1B Neighboring gene tetraspanin 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cuprous ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synapse organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon terminus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-synuclein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261540.1 → NP_001248469.1  beta-synuclein

      See identical proteins and their annotated locations for NP_001248469.1

      Status: PROVISIONAL

      Source sequence(s)
      JU319705
      UniProtKB/TrEMBL
      A0A8J8Y699, F7H5X2, G7MU30
      Related
      ENSMMUP00000000185.2, ENSMMUT00000000198.4
      Conserved Domains (1) summary
      pfam01387
      Location:1 → 121
      Synuclein

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      174078701..174088986 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028849114.1 → XP_028704947.1  beta-synuclein isoform X4

      Conserved Domains (1) summary
      pfam01387
      Location:1 → 82
      Synuclein

    2. XM_028849113.1 → XP_028704946.1  beta-synuclein isoform X3

      UniProtKB/TrEMBL
      H9FYT2
      Conserved Domains (1) summary
      pfam01387
      Location:1 → 117
      Synuclein

    3. XM_015141467.2 → XP_014996953.2  beta-synuclein isoform X2

      Conserved Domains (1) summary
      pfam01387
      Location:1 → 121
      Synuclein

    4. XM_015141466.2 → XP_014996952.2  beta-synuclein isoform X1

      Conserved Domains (1) summary
      pfam01387
      Location:1 → 125
      Synuclein
    Nucleotide Protein
    Heading Accession and Version

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