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    NUP54 nucleoporin 54 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700112, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NUP54provided by VGNC
    Official Full Name
    nucleoporin 54provided by VGNC
    Primary source
    VGNC:VGNC:75420
    Locus tag
    EGK_15770
    See related
    Ensembl:ENSMMUG00000020910
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See NUP54 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (57577984..57611205)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (58407484..58440708)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene scavenger receptor class B member 2 Neighboring gene uncharacterized LOC106998347 Neighboring gene ADP-ribosyltransferase 3 (inactive) Neighboring gene 60S ribosomal protein L36 pseudogene Neighboring gene C-X-C motif chemokine ligand 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NLS-bearing protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear pore organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to nuclear inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore central transport channel IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoporin p54

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      57577984..57611205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015138496.2 → XP_014993982.1  nucleoporin p54 isoform X2

      UniProtKB/TrEMBL
      A0A5S6RA77, A0A8J8XDE0, F7H505, G7MT13
      Related
      ENSMMUP00000027511.4, ENSMMUT00000029403.4
      Conserved Domains (2) summary
      pfam13874
      Location:301 → 438
      Nup54; Nucleoporin complex subunit 54
      pfam18437
      Location:454 → 492
      Nup54_C; Nup54 C-terminal interacting domain

    2. XM_001097440.4 → XP_001097440.2  nucleoporin p54 isoform X1

      UniProtKB/TrEMBL
      F7H507
      Related
      ENSMMUP00000027510.3, ENSMMUT00000029401.4
      Conserved Domains (2) summary
      pfam13874
      Location:355 → 492
      Nup54; Nucleoporin complex subunit 54
      pfam18437
      Location:508 → 546
      Nup54_C; Nup54 C-terminal interacting domain
    Nucleotide Protein
    Heading Accession and Version

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