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    SSBP1 single stranded DNA binding protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694459, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SSBP1provided by VGNC
    Official Full Name
    single stranded DNA binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:77886
    Locus tag
    EGK_14212
    See related
    Ensembl:ENSMMUG00000022442
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SSBP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (168133753..168145580)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (168130691..168142508)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114677135 Neighboring gene acylglycerol kinase Neighboring gene DENN domain containing 11 Neighboring gene U1 spliceosomal RNA Neighboring gene WEE2 oocyte meiosis inhibiting kinase Neighboring gene taste 2 receptor member 3 Neighboring gene taste 2 receptor member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial nucleoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    single-stranded DNA-binding protein, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266152.1 → NP_001253081.1  single-stranded DNA-binding protein, mitochondrial

      See identical proteins and their annotated locations for NP_001253081.1

      Status: PROVISIONAL

      Source sequence(s)
      JV045286
      UniProtKB/TrEMBL
      A0A1D5QD86, A0A8J8Y2U4, F6X3C0, G7MMQ4
      Related
      ENSMMUP00000029533.2, ENSMMUT00000031563.4
      Conserved Domains (1) summary
      TIGR00621
      Location:27 → 141
      ssb; single stranded DNA-binding protein (ssb)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      168133753..168145580
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015135069.2 → XP_014990555.1  single-stranded DNA-binding protein, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A1D5QD86, A0A8J8Y2U4, F6X3C0, G7MMQ4
      Conserved Domains (1) summary
      TIGR00621
      Location:27 → 141
      ssb; single stranded DNA-binding protein (ssb)

    2. XM_015135066.2 → XP_014990552.1  single-stranded DNA-binding protein, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZAQ4, A0A5F8AR45
      Related
      ENSMMUP00000062641.1, ENSMMUT00000102383.1
      Conserved Domains (1) summary
      cl09930
      Location:27 → 154
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

    3. XM_015135063.2 → XP_014990549.1  single-stranded DNA-binding protein, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZAQ4, A0A5F8AR45
      Related
      ENSMMUP00000079863.1, ENSMMUT00000101496.1
      Conserved Domains (1) summary
      cl09930
      Location:27 → 154
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

    4. XM_015135068.2 → XP_014990554.1  single-stranded DNA-binding protein, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A1D5QD86, A0A8J8Y2U4, F6X3C0, G7MMQ4
      Conserved Domains (1) summary
      TIGR00621
      Location:27 → 141
      ssb; single stranded DNA-binding protein (ssb)

    5. XM_015135064.2 → XP_014990550.1  single-stranded DNA-binding protein, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZAQ4, A0A5F8AR45
      Conserved Domains (1) summary
      cl09930
      Location:27 → 154
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
    Nucleotide Protein
    Heading Accession and Version

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