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    OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700219, updated on 17-Aug-2024

    Summary

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    Official Symbol
    OGFOD1provided by VGNC
    Official Full Name
    2-oxoglutarate and iron dependent oxygenase domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:75459
    See related
    Ensembl:ENSMMUG00000029125
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See OGFOD1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (43649549..43676029)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (40578480..40605397)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene autocrine motility factor receptor Neighboring gene nudix hydrolase 21 Neighboring gene Bardet-Biedl syndrome 2 Neighboring gene uncharacterized LOC106995034

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidyl-proline dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-proline hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of translational termination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prolyl 3-hydroxylase OGFOD1
    Names
    2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      43649549..43676029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028841321.1 → XP_028697154.1  prolyl 3-hydroxylase OGFOD1 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AR27, H9FWM5
      Related
      ENSMMUP00000051019.2, ENSMMUT00000068301.2
      Conserved Domains (2) summary
      pfam13661
      Location:141 → 238
      2OG-FeII_Oxy_4; 2OG-Fe(II) oxygenase superfamily
      cl21496
      Location:261 → 541
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    2. XM_028841322.1 → XP_028697155.1  prolyl 3-hydroxylase OGFOD1 isoform X2

      UniProtKB/TrEMBL
      A0A5F8ACW8
      Related
      ENSMMUP00000075222.1, ENSMMUT00000096419.1
      Conserved Domains (2) summary
      pfam13661
      Location:86 → 183
      2OG-FeII_Oxy_4; 2OG-Fe(II) oxygenase superfamily
      cl21496
      Location:206 → 486
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials