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    SEMA3F semaphorin 3F [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703995, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SEMA3Fprovided by VGNC
    Official Full Name
    semaphorin 3Fprovided by VGNC
    Primary source
    VGNC:VGNC:77164
    Locus tag
    EGK_11616
    See related
    Ensembl:ENSMMUG00000010337
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA3F in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (106277258..106311665)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (92132680..92167380, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 6 Neighboring gene RNA binding motif protein 5 Neighboring gene uncharacterized LOC114676350 Neighboring gene uncharacterized LOC114676351 Neighboring gene G protein subunit alpha transducin 1 Neighboring gene solute carrier family 38 member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-3F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      106277258..106311665
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001103281.4 → XP_001103281.2  semaphorin-3F isoform X1

      UniProtKB/TrEMBL
      A0A5S6R7F1, A0A8J8XCQ7, F7HC49, G7ML76
      Related
      ENSMMUP00000039328.3, ENSMMUT00000046285.3
      Conserved Domains (4) summary
      cd05871
      Location:609 → 697
      Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
      cd11254
      Location:48 → 548
      Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
      smart00410
      Location:612 → 696
      IG_like; Immunoglobulin like
      smart00423
      Location:547 → 584
      PSI; domain found in Plexins, Semaphorins and Integrins

    2. XM_015130868.2 → XP_014986354.1  semaphorin-3F isoform X2

      Conserved Domains (3) summary
      cd05871
      Location:578 → 666
      Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
      cd11254
      Location:48 → 517
      Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
      smart00423
      Location:516 → 553
      PSI; domain found in Plexins, Semaphorins and Integrins
    Nucleotide Protein
    Heading Accession and Version

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