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    TNPO1 transportin 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707195, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TNPO1provided by VGNC
    Official Full Name
    transportin 1provided by VGNC
    Primary source
    VGNC:VGNC:79961
    See related
    Ensembl:ENSMMUG00000020923
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TNPO1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (69643381..69738813)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (69331532..69430458)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene cold shock domain-containing protein E1 pseudogene Neighboring gene uncharacterized LOC706882 Neighboring gene uncharacterized LOC106998804 Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene CTD nuclear envelope phosphatase 1 pseudogene Neighboring gene FCH and mu domain containing endocytic adaptor 2 Neighboring gene calcineurin B homologous protein 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transportin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      69643381..69738813
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015140266.2 → XP_014995752.2  transportin-1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QQ14, A0A1D5R085, G7MU97, H9EQ62
      Related
      ENSMMUP00000050141.2, ENSMMUT00000053303.2
      Conserved Domains (2) summary
      COG5215
      Location:32 → 767
      KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
      sd00044
      Location:103 → 124
      HEAT; HEAT repeat [structural motif]

    2. XM_015140267.2 → XP_014995753.2  transportin-1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QQR3, G7MU97, H9EQ61
      Related
      ENSMMUP00000050391.2, ENSMMUT00000064474.2
      Conserved Domains (2) summary
      COG5215
      Location:24 → 759
      KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
      sd00044
      Location:95 → 116
      HEAT; HEAT repeat [structural motif]

    3. XM_028849506.1 → XP_028705339.1  transportin-1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QQR3, G7MU97, H9EQ61
      Related
      ENSMMUP00000027531.4, ENSMMUT00000029424.4
      Conserved Domains (2) summary
      COG5215
      Location:24 → 759
      KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
      sd00044
      Location:95 → 116
      HEAT; HEAT repeat [structural motif]

    RNA

    1. XR_001445346.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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