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    NFYA nuclear transcription factor Y subunit alpha [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 719697, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NFYAprovided by VGNC
    Official Full Name
    nuclear transcription factor Y subunit alphaprovided by VGNC
    Primary source
    VGNC:VGNC:75344
    Locus tag
    EGK_14878
    See related
    Ensembl:ENSMMUG00000021173
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See NFYA in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (128303730..128332958, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (42024072..42053291)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene triggering receptor expressed on myeloid cells 2 Neighboring gene triggering receptor expressed on myeloid cells like 1 Neighboring gene adenylate cyclase type 10 Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 2 Neighboring gene translocator protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit alpha
    Names
    nuclear transcription factor Y, alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194727.2 → NP_001181656.1  nuclear transcription factor Y subunit alpha

      See identical proteins and their annotated locations for NP_001181656.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000341
      UniProtKB/TrEMBL
      F7H6H6, F7H6J8, H9FUW6
      Related
      ENSMMUP00000052021.1, ENSMMUT00000054352.2
      Conserved Domains (1) summary
      pfam02045
      Location:234 → 289
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      128303730..128332958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001117262.4 → XP_001117262.1  nuclear transcription factor Y subunit alpha isoform X1

      See identical proteins and their annotated locations for XP_001117262.1

      UniProtKB/TrEMBL
      A0A1D5QSZ7, A0A8J8YSS0, G7MP93, H9Z9B0
      Related
      ENSMMUP00000051175.1, ENSMMUT00000074189.2
      Conserved Domains (1) summary
      pfam02045
      Location:263 → 318
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    2. XM_015136273.2 → XP_014991759.1  nuclear transcription factor Y subunit alpha isoform X4

      UniProtKB/TrEMBL
      F7H6H6, F7H6J8, H9FUW6
      Related
      ENSMMUP00000027880.4, ENSMMUT00000029789.4
      Conserved Domains (1) summary
      pfam02045
      Location:234 → 289
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    3. XM_015136274.2 → XP_014991760.1  nuclear transcription factor Y subunit alpha isoform X5

      UniProtKB/TrEMBL
      H9FUW6
      Conserved Domains (1) summary
      pfam02045
      Location:228 → 283
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    4. XM_015136271.2 → XP_014991757.1  nuclear transcription factor Y subunit alpha isoform X2

      UniProtKB/TrEMBL
      H9Z9B0
      Conserved Domains (1) summary
      pfam02045
      Location:262 → 317
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    5. XM_015136272.2 → XP_014991758.1  nuclear transcription factor Y subunit alpha isoform X3

      UniProtKB/TrEMBL
      H9Z9B0
      Conserved Domains (1) summary
      pfam02045
      Location:257 → 312
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    6. XM_015136270.2 → XP_014991756.1  nuclear transcription factor Y subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A1D5QSZ7, A0A8J8YSS0, G7MP93, H9Z9B0
      Conserved Domains (1) summary
      pfam02045
      Location:263 → 318
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    7. XM_015136269.2 → XP_014991755.1  nuclear transcription factor Y subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A1D5QSZ7, A0A8J8YSS0, G7MP93, H9Z9B0
      Conserved Domains (1) summary
      pfam02045
      Location:263 → 318
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
    Nucleotide Protein
    Heading Accession and Version

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