U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TMCC1 transmembrane and coiled-coil domain family 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702576, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TMCC1provided by VGNC
    Official Full Name
    transmembrane and coiled-coil domain family 1provided by VGNC
    Primary source
    VGNC:VGNC:79776
    Locus tag
    EGK_03997
    See related
    Ensembl:ENSMMUG00000016793
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TMCC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (146578982..146832518)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (50915816..51166689, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene thyrotropin releasing hormone Neighboring gene uncharacterized LOC106996814 Neighboring gene U6 spliceosomal RNA Neighboring gene plexin D1 Neighboring gene H1.8 linker histone

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome fission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome membrane tubulation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in membrane fission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane and coiled-coil domains protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261150.1 → NP_001248079.1  transmembrane and coiled-coil domains protein 1

      See identical proteins and their annotated locations for NP_001248079.1

      Status: PROVISIONAL

      Source sequence(s)
      JV044514
      UniProtKB/TrEMBL
      A0A8J8Y8G5, F7CZE2, F7HEJ1, G7N7T9
      Related
      ENSMMUP00000075727.1, ENSMMUT00000092633.1
      Conserved Domains (1) summary
      pfam10267
      Location:231 → 638
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      146578982..146832518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015130129.2 → XP_014985615.1  transmembrane and coiled-coil domains protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y8G5, F7CZE2, F7HEJ1, G7N7T9
      Conserved Domains (1) summary
      pfam10267
      Location:231 → 638
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    2. XM_015130128.2 → XP_014985614.1  transmembrane and coiled-coil domains protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y8G5, F7CZE2, F7HEJ1, G7N7T9
      Related
      ENSMMUP00000015349.2, ENSMMUT00000016380.4
      Conserved Domains (1) summary
      pfam10267
      Location:231 → 638
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    3. XM_015130130.2 → XP_014985616.1  transmembrane and coiled-coil domains protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y8G5, F7CZE2, F7HEJ1, G7N7T9
      Related
      ENSMMUP00000022076.4, ENSMMUT00000023594.4
      Conserved Domains (1) summary
      pfam10267
      Location:231 → 638
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    4. XM_015130131.2 → XP_014985617.1  transmembrane and coiled-coil domains protein 1 isoform X2

      Conserved Domains (1) summary
      pfam10267
      Location:117 → 524
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    5. XM_028843188.1 → XP_028699021.1  transmembrane and coiled-coil domains protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y8G5, F7CZE2, F7HEJ1, G7N7T9
      Conserved Domains (1) summary
      pfam10267
      Location:231 → 638
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    6. XM_028843191.1 → XP_028699024.1  transmembrane and coiled-coil domains protein 1 isoform X2

      Conserved Domains (1) summary
      pfam10267
      Location:117 → 524
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    7. XM_028843187.1 → XP_028699020.1  transmembrane and coiled-coil domains protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y8G5, F7CZE2, F7HEJ1, G7N7T9
      Conserved Domains (1) summary
      pfam10267
      Location:231 → 638
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    8. XM_028843189.1 → XP_028699022.1  transmembrane and coiled-coil domains protein 1 isoform X2

      Conserved Domains (1) summary
      pfam10267
      Location:117 → 524
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    9. XM_028843192.1 → XP_028699025.1  transmembrane and coiled-coil domains protein 1 isoform X4

      Conserved Domains (1) summary
      pfam10267
      Location:56 → 460
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    10. XM_015130133.2 → XP_014985619.1  transmembrane and coiled-coil domains protein 1 isoform X5

      UniProtKB/TrEMBL
      F7CZE2
      Conserved Domains (1) summary
      pfam10267
      Location:48 → 455
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    11. XM_015130132.2 → XP_014985618.1  transmembrane and coiled-coil domains protein 1 isoform X3

      Conserved Domains (1) summary
      pfam10267
      Location:58 → 465
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    12. XM_028843193.1 → XP_028699026.1  transmembrane and coiled-coil domains protein 1 isoform X6

      Conserved Domains (1) summary
      pfam10267
      Location:1 → 314
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.