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    PALLD palladin, cytoskeletal associated protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693824, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PALLDprovided by VGNC
    Official Full Name
    palladin, cytoskeletal associated proteinprovided by VGNC
    Primary source
    VGNC:VGNC:75636
    See related
    Ensembl:ENSMMUG00000007365
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PALLD in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (165840453..166273677)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (168706968..169178283)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678426 Neighboring gene DExD/H-box 60 like Neighboring gene small nucleolar RNA SNORA51 Neighboring gene transcription factor BTF3 homolog 4 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L9 pseudogene Neighboring gene uncharacterized LOC106998571 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114678427 Neighboring gene carbonyl reductase 4 Neighboring gene SH3 domain containing ring finger 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in dendrite self-avoidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    palladin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      165840453..166273677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015139485.2 → XP_014994971.2  palladin isoform X3

      UniProtKB/TrEMBL
      F6Q617, G7MSA5
      Related
      ENSMMUP00000004851.4, ENSMMUT00000005149.4
      Conserved Domains (2) summary
      cd05893
      Location:1268 → 1342
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:272 → 362
      I-set; Immunoglobulin I-set domain

    2. XM_028848875.1 → XP_028704708.1  palladin isoform X4

      UniProtKB/TrEMBL
      G7MSA5
      Conserved Domains (2) summary
      cd05893
      Location:1251 → 1325
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:272 → 362
      I-set; Immunoglobulin I-set domain

    3. XM_015139486.2 → XP_014994972.2  palladin isoform X5

      UniProtKB/TrEMBL
      A0A1D5QK24, F7E5P5
      Related
      ENSMMUP00000009662.4, ENSMMUT00000010298.4
      Conserved Domains (2) summary
      cd05893
      Location:1177 → 1251
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:272 → 362
      I-set; Immunoglobulin I-set domain

    4. XM_015139484.2 → XP_014994970.2  palladin isoform X1

      UniProtKB/TrEMBL
      A0A1D5QK24, F7GYW4
      Related
      ENSMMUP00000034563.3, ENSMMUT00000041535.3
      Conserved Domains (2) summary
      cd05893
      Location:1268 → 1342
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:272 → 362
      I-set; Immunoglobulin I-set domain

    5. XM_001082273.4 → XP_001082273.3  palladin isoform X2

      UniProtKB/TrEMBL
      A0A1D5QK24, F7GYW8
      Related
      ENSMMUP00000034560.3, ENSMMUT00000041532.3
      Conserved Domains (2) summary
      cd05893
      Location:1251 → 1325
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:272 → 362
      I-set; Immunoglobulin I-set domain

    6. XM_015139487.2 → XP_014994973.2  palladin isoform X6

      Conserved Domains (2) summary
      cd05893
      Location:885 → 959
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:769 → 859
      I-set; Immunoglobulin I-set domain

    7. XM_028848876.1 → XP_028704709.1  palladin isoform X6

      Conserved Domains (2) summary
      cd05893
      Location:885 → 959
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:769 → 859
      I-set; Immunoglobulin I-set domain

    8. XM_028848877.1 → XP_028704710.1  palladin isoform X7

      Conserved Domains (4) summary
      cd00096
      Location:440 → 443
      Ig; Ig strand A [structural motif]
      cd05892
      Location:539 → 630
      IgI_Myotilin_C; C-terminal immunoglobulin (Ig)-like domain of myotilin; member of the I-set of Ig superfamily (IgSF) domains
      cd05893
      Location:306 → 397
      IgI_1_Palladin_C; First C-terminal immunoglobulin (Ig)-like domain of palladin; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:440 → 530
      Ig; Immunoglobulin domain

    9. XM_015139489.2 → XP_014994975.2  palladin isoform X8

      UniProtKB/TrEMBL
      I0FQ44
      Related
      ENSMMUP00000062218.1, ENSMMUT00000094209.1
      Conserved Domains (2) summary
      cd05893
      Location:539 → 613
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:423 → 513
      I-set; Immunoglobulin I-set domain
    Nucleotide Protein
    Heading Accession and Version

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