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    TNFAIP3 TNF alpha induced protein 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704130, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TNFAIP3provided by VGNC
    Official Full Name
    TNF alpha induced protein 3provided by VGNC
    Primary source
    VGNC:VGNC:78580
    Locus tag
    EGK_15308
    See related
    Ensembl:ENSMMUG00000008869
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TNFAIP3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (41481871..41497577)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (129418174..129433938, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene transcription factor BTF3 homolog 4-like Neighboring gene tyrosine-protein phosphatase non-receptor type 11 pseudogene Neighboring gene uncharacterized LOC114677502 Neighboring gene uncharacterized LOC114677503 Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K29-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K33-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor necrosis factor alpha-induced protein 3
    Names
    tumor necrosis factor, alpha-induced protein 3
    NP_001248273.1
    XP_014992761.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261344.1 → NP_001248273.1  tumor necrosis factor alpha-induced protein 3

      See identical proteins and their annotated locations for NP_001248273.1

      Status: PROVISIONAL

      Source sequence(s)
      JU470469
      UniProtKB/TrEMBL
      A0A1D5Q4D8, A0A1D5QFH0, A0A1D5QN07, A0A8J8XZD2, F7DY40, G7MQ95
      Related
      ENSMMUP00000042902.2, ENSMMUT00000066787.2
      Conserved Domains (2) summary
      smart00259
      Location:759 → 784
      ZnF_A20; A20-like zinc fingers
      pfam02338
      Location:98 → 257
      OTU; OTU-like cysteine protease

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      41481871..41497577
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015137275.2 → XP_014992761.1  tumor necrosis factor alpha-induced protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q4D8, A0A1D5QFH0, A0A1D5QN07, A0A8J8XZD2, F7DY40, G7MQ95
      Related
      ENSMMUP00000011633.2, ENSMMUT00000012404.4
      Conserved Domains (2) summary
      smart00259
      Location:759 → 784
      ZnF_A20; A20-like zinc fingers
      pfam02338
      Location:98 → 257
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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