U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    JADE1 jade family PHD finger 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693690, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    JADE1provided by VGNC
    Official Full Name
    jade family PHD finger 1provided by VGNC
    Primary source
    VGNC:VGNC:73687
    Locus tag
    EGK_16088
    See related
    Ensembl:ENSMMUG00000002145
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    PHF17
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See JADE1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (126580612..126649058)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (128135813..128204058)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106998497 Neighboring gene small nucleolar RNA U13 Neighboring gene sodium channel and clathrin linker 1 Neighboring gene ribosomal protein S23-like Neighboring gene chromosome 5 C4orf33 homolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein Jade-1
    Names
    PHD finger protein 17

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266133.1 → NP_001253062.1  protein Jade-1

      See identical proteins and their annotated locations for NP_001253062.1

      Status: PROVISIONAL

      Source sequence(s)
      JV048293
      UniProtKB/TrEMBL
      A0A5F7Z835, A0A5F8AAI5, A0A8J8XHY2, G7MRZ2
      Related
      ENSMMUP00000061276.1, ENSMMUT00000081351.1
      Conserved Domains (2) summary
      COG5141
      Location:99 → 529
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      126580612..126649058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015138934.2 → XP_014994420.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A5F7Z835, A0A5F8AAI5, A0A8J8XHY2, G7MRZ2
      Related
      ENSMMUP00000076769.1, ENSMMUT00000081123.1
      Conserved Domains (2) summary
      COG5141
      Location:99 → 529
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins

    2. XM_015138936.2 → XP_014994422.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A5F7Z835, A0A5F8AAI5, A0A8J8XHY2, G7MRZ2
      Conserved Domains (2) summary
      COG5141
      Location:99 → 529
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins

    3. XM_015138935.2 → XP_014994421.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A5F7Z835, A0A5F8AAI5, A0A8J8XHY2, G7MRZ2
      Related
      ENSMMUP00000080467.1, ENSMMUT00000101903.1
      Conserved Domains (2) summary
      COG5141
      Location:99 → 529
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins

    4. XM_028847943.1 → XP_028703776.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A5F7Z835, A0A5F8AAI5, A0A8J8XHY2, G7MRZ2
      Conserved Domains (2) summary
      COG5141
      Location:99 → 529
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins

    5. XM_015138933.2 → XP_014994419.1  protein Jade-1 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AAI5, F6UGJ1
      Related
      ENSMMUP00000002861.3, ENSMMUT00000003029.4
      Conserved Domains (3) summary
      cd15671
      Location:273 → 383
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
      cd15679
      Location:220 → 265
      PHD_JADE1; PHD finger found in protein Jade-1 and similar proteins
      pfam10513
      Location:107 → 195
      EPL1; Enhancer of polycomb-like

    6. XM_028847944.1 → XP_028703777.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A5F7Z835, A0A5F8AAI5, A0A8J8XHY2, G7MRZ2
      Conserved Domains (2) summary
      COG5141
      Location:99 → 529
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.