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    OTX1 orthodenticle homeobox 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694175, updated on 17-Aug-2024

    Summary

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    Official Symbol
    OTX1provided by VGNC
    Official Full Name
    orthodenticle homeobox 1provided by VGNC
    Primary source
    VGNC:VGNC:75726
    See related
    Ensembl:ENSMMUG00000051405
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See OTX1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (45739378..45746541, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (63905015..63912162)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene WD repeat containing planar cell polarity effector Neighboring gene uncharacterized LOC114671955 Neighboring gene ornithine decarboxylase 1-like Neighboring gene WAS/WASL-interacting protein family member 3-like Neighboring gene uncharacterized LOC114671803 Neighboring gene EH domain binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein OTX1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      45739378..45746541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001084150.4 → XP_001084150.1  homeobox protein OTX1

      See identical proteins and their annotated locations for XP_001084150.1

      UniProtKB/TrEMBL
      A0A5F7ZLS2, G7NA60
      Related
      ENSMMUP00000066577.1, ENSMMUT00000082562.1
      Conserved Domains (2) summary
      pfam00046
      Location:42 → 95
      Homeobox; Homeobox domain
      pfam03529
      Location:180 → 274
      TF_Otx; Otx1 transcription factor
    Nucleotide Protein
    Heading Accession and Version

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