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    SOBP sine oculis binding protein homolog [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698484, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SOBPprovided by VGNC
    Official Full Name
    sine oculis binding protein homologprovided by VGNC
    Primary source
    VGNC:VGNC:77790
    See related
    Ensembl:ENSMMUG00000022950
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    JXC1
    Orthologs
    human mouse all
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    Genomic context

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    See SOBP in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (65584324..65756700, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (106521297..106695022)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene SEC63 homolog, protein translocation regulator Neighboring gene Scm polycomb group protein like 4 Neighboring gene uncharacterized LOC114677532 Neighboring gene ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1-like Neighboring gene uncharacterized LOC106998063 Neighboring gene uncharacterized LOC106998062 Neighboring gene decaprenyl diphosphate synthase subunit 2 Neighboring gene 40S ribosomal protein S24 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in animal organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sine oculis-binding protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104534.1 → NP_001098004.1  sine oculis-binding protein homolog

      See identical proteins and their annotated locations for NP_001098004.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ503411
      UniProtKB/TrEMBL
      A7XYI9, F6U6M7
      Related
      ENSMMUP00000030232.4, ENSMMUT00000032309.4
      Conserved Domains (1) summary
      pfam15279
      Location:224 → 524
      SOBP; Sine oculis-binding protein

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      65584324..65756700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015137029.2 → XP_014992515.2  sine oculis-binding protein homolog isoform X1

      UniProtKB/TrEMBL
      F6U6M0
      Related
      ENSMMUP00000030233.4, ENSMMUT00000032310.4
      Conserved Domains (1) summary
      pfam15279
      Location:192 → 492
      SOBP; Sine oculis-binding protein

    2. XM_028846667.1 → XP_028702500.1  sine oculis-binding protein homolog isoform X3

      UniProtKB/TrEMBL
      A7XYI9, F6U6M7
      Conserved Domains (1) summary
      pfam15279
      Location:224 → 524
      SOBP; Sine oculis-binding protein

    3. XM_028846666.1 → XP_028702499.1  sine oculis-binding protein homolog isoform X2

      UniProtKB/TrEMBL
      A0A1D5R6P9
      Related
      ENSMMUP00000055987.2, ENSMMUT00000054546.2
      Conserved Domains (1) summary
      pfam15279
      Location:186 → 486
      SOBP; Sine oculis-binding protein

    4. XM_028846668.1 → XP_028702501.1  sine oculis-binding protein homolog isoform X4

      Conserved Domains (1) summary
      pfam15279
      Location:75 → 375
      SOBP; Sine oculis-binding protein
    Nucleotide Protein
    Heading Accession and Version

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