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    L1TD1 LINE1 type transposase domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696162, updated on 17-Aug-2024

    Summary

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    Official Symbol
    L1TD1provided by VGNC
    Official Full Name
    LINE1 type transposase domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:74125
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See L1TD1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (162238034..162243233, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (61881217..61897499)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene bcl-2-binding component 3 Neighboring gene ubiquitin specific peptidase 1 Neighboring gene U6 spliceosomal RNA Neighboring gene KN motif and ankyrin repeat domains 4 Neighboring gene uncharacterized LOC114669835 Neighboring gene uncharacterized LOC114672197

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrotransposition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LINE-1 type transposase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      162238034..162243233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001084821.4 → XP_001084821.2  LINE-1 type transposase domain-containing protein 1

      UniProtKB/TrEMBL
      A0A088QCF6
      Conserved Domains (2) summary
      pfam02994
      Location:721 → 815
      Transposase_22; L1 transposable element RBD-like domain
      pfam17490
      Location:819 → 882
      Tnp_22_dsRBD; L1 transposable element dsRBD-like domain
    Nucleotide Protein
    Heading Accession and Version

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