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    CD47 CD47 molecule [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704980, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CD47provided by VGNC
    Official Full Name
    CD47 moleculeprovided by VGNC
    Primary source
    VGNC:VGNC:70767
    See related
    Ensembl:ENSMMUG00000008791
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CD47 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (168117668..168166616)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (29120724..29169548, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 57 Neighboring gene uncharacterized LOC114676439 Neighboring gene uncharacterized LOC114676440 Neighboring gene uncharacterized LOC106996762

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables thrombospondin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of phagocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular exosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leukocyte surface antigen CD47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266517.1 → NP_001253446.1  leukocyte surface antigen CD47 precursor

      See identical proteins and their annotated locations for NP_001253446.1

      Status: PROVISIONAL

      Source sequence(s)
      JU321354
      UniProtKB/TrEMBL
      A0A5F8AK49, G7MK38
      Related
      ENSMMUP00000077319.1, ENSMMUT00000089536.1
      Conserved Domains (2) summary
      pfam04549
      Location:144 → 292
      CD47; CD47 transmembrane region
      pfam08204
      Location:20 → 131
      V-set_CD47; CD47 immunoglobulin-like domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      168117668..168166616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015129736.2 → XP_014985222.1  leukocyte surface antigen CD47 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AJV0, G7MK38
      Related
      ENSMMUP00000078121.1, ENSMMUT00000104365.1
      Conserved Domains (2) summary
      pfam04549
      Location:144 → 292
      CD47; CD47 transmembrane region
      pfam08204
      Location:20 → 131
      V-set_CD47; CD47 immunoglobulin-like domain

    2. XM_015129741.2 → XP_014985227.1  leukocyte surface antigen CD47 isoform X2

      UniProtKB/TrEMBL
      F7F5Y9, F7F5Z8, G7MK38
      Related
      ENSMMUP00000068471.1, ENSMMUT00000102971.1
      Conserved Domains (2) summary
      pfam04549
      Location:144 → 292
      CD47; CD47 transmembrane region
      pfam08204
      Location:20 → 131
      V-set_CD47; CD47 immunoglobulin-like domain

    3. XM_015129762.2 → XP_014985248.1  leukocyte surface antigen CD47 isoform X3

      UniProtKB/TrEMBL
      G7MK38
      Related
      ENSMMUP00000067932.1, ENSMMUT00000101803.1
      Conserved Domains (2) summary
      pfam04549
      Location:144 → 292
      CD47; CD47 transmembrane region
      pfam08204
      Location:20 → 131
      V-set_CD47; CD47 immunoglobulin-like domain

    RNA

    1. XR_001442773.2 RNA Sequence

    2. XR_001442774.2 RNA Sequence

    3. XR_001442775.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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