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    NFIB nuclear factor I B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714098, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NFIBprovided by VGNC
    Official Full Name
    nuclear factor I Bprovided by VGNC
    Primary source
    VGNC:VGNC:75335
    Locus tag
    EGK_07699
    See related
    Ensembl:ENSMMUG00000014697
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See NFIB in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (69272440..69513341)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (69654065..69956586)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106993754 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene ATP synthase subunit d, mitochondrial pseudogene Neighboring gene 60S ribosomal protein L3 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear factor 1 B-type

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      69272440..69513341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015117686.2 → XP_014973172.1  nuclear factor 1 B-type isoform X4

      UniProtKB/TrEMBL
      A0A1D5QSR0, F6PST0
      Related
      ENSMMUP00000051088.2, ENSMMUT00000058540.2
      Conserved Domains (3) summary
      pfam10524
      Location:3 → 43
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      pfam00859
      Location:205 → 494
      CTF_NFI; CTF/NF-I family transcription modulation region
      cl00055
      Location:65 → 169
      MH1; N-terminal Mad Homology 1 (MH1) domain

    2. XM_028835165.1 → XP_028690998.1  nuclear factor 1 B-type isoform X9

      UniProtKB/TrEMBL
      A0A5F8ANU3, F6PST0
      Related
      ENSMMUP00000079050.1, ENSMMUT00000105281.1
      Conserved Domains (3) summary
      pfam00859
      Location:205 → 498
      CTF_NFI; CTF/NF-I family transcription modulation region
      pfam10524
      Location:4 → 43
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:65 → 169
      MH1; N-terminal Mad Homology 1 (MH1) domain

    3. XM_001111171.4 → XP_001111171.1  nuclear factor 1 B-type isoform X10

      See identical proteins and their annotated locations for XP_001111171.1

      UniProtKB/TrEMBL
      F6PST0
      Conserved Domains (3) summary
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      pfam00859
      Location:209 → 493
      CTF_NFI; CTF/NF-I family transcription modulation region
      cl00055
      Location:69 → 173
      MH1; N-terminal Mad Homology 1 (MH1) domain

    4. XM_001110962.4 → XP_001110962.1  nuclear factor 1 B-type isoform X14

      See identical proteins and their annotated locations for XP_001110962.1

      UniProtKB/TrEMBL
      F7GTP2, F7GTP3, H9EPW1
      Related
      ENSMMUP00000019284.3, ENSMMUT00000020609.4
      Conserved Domains (3) summary
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      pfam00859
      Location:209 → 415
      CTF_NFI; CTF/NF-I family transcription modulation region
      cl00055
      Location:69 → 173
      MH1; N-terminal Mad Homology 1 (MH1) domain

    5. XM_015117689.2 → XP_014973175.1  nuclear factor 1 B-type isoform X13

      UniProtKB/TrEMBL
      F6PSV2
      Conserved Domains (4) summary
      PRK15127
      Location:385 → 475
      PRK15127; multidrug efflux RND transporter permease subunit AcrB
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      pfam00859
      Location:209 → 416
      CTF_NFI; CTF/NF-I family transcription modulation region
      cl00055
      Location:69 → 173
      MH1; N-terminal Mad Homology 1 (MH1) domain

    6. XM_015117687.2 → XP_014973173.1  nuclear factor 1 B-type isoform X7

      UniProtKB/TrEMBL
      F6PST0
      Conserved Domains (3) summary
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      pfam00859
      Location:209 → 489
      CTF_NFI; CTF/NF-I family transcription modulation region
      cl00055
      Location:69 → 173
      MH1; N-terminal Mad Homology 1 (MH1) domain

    7. XM_015117684.2 → XP_014973170.1  nuclear factor 1 B-type isoform X3

      UniProtKB/TrEMBL
      F6PST0, G7NFZ7
      Conserved Domains (3) summary
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      pfam00859
      Location:209 → 498
      CTF_NFI; CTF/NF-I family transcription modulation region
      cl00055
      Location:69 → 173
      MH1; N-terminal Mad Homology 1 (MH1) domain

    8. XM_028835163.1 → XP_028690996.1  nuclear factor 1 B-type isoform X6

      UniProtKB/TrEMBL
      F6PST0
      Related
      ENSMMUP00000039247.2, ENSMMUT00000046205.3
      Conserved Domains (3) summary
      pfam10524
      Location:2 → 38
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      pfam00859
      Location:200 → 489
      CTF_NFI; CTF/NF-I family transcription modulation region
      cl00055
      Location:60 → 164
      MH1; N-terminal Mad Homology 1 (MH1) domain

    9. XM_028835161.1 → XP_028690994.1  nuclear factor 1 B-type isoform X2

      UniProtKB/TrEMBL
      F6PST0
      Conserved Domains (3) summary
      pfam00859
      Location:211 → 499
      CTF_NFI; CTF/NF-I family transcription modulation region
      pfam10524
      Location:11 → 49
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:71 → 175
      MH1; N-terminal Mad Homology 1 (MH1) domain

    10. XM_028835160.1 → XP_028690993.1  nuclear factor 1 B-type isoform X1

      UniProtKB/TrEMBL
      F6PST0
      Conserved Domains (3) summary
      pfam00859
      Location:211 → 500
      CTF_NFI; CTF/NF-I family transcription modulation region
      pfam10524
      Location:11 → 49
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:71 → 175
      MH1; N-terminal Mad Homology 1 (MH1) domain

    11. XM_028835162.1 → XP_028690995.1  nuclear factor 1 B-type isoform X5

      UniProtKB/TrEMBL
      F6PST0
      Conserved Domains (3) summary
      pfam00859
      Location:211 → 491
      CTF_NFI; CTF/NF-I family transcription modulation region
      pfam10524
      Location:11 → 49
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:71 → 175
      MH1; N-terminal Mad Homology 1 (MH1) domain

    12. XM_028835164.1 → XP_028690997.1  nuclear factor 1 B-type isoform X8

      UniProtKB/TrEMBL
      F6PST0
      Conserved Domains (3) summary
      pfam00859
      Location:211 → 504
      CTF_NFI; CTF/NF-I family transcription modulation region
      pfam10524
      Location:11 → 49
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:71 → 175
      MH1; N-terminal Mad Homology 1 (MH1) domain

    13. XM_028835166.1 → XP_028690999.1  nuclear factor 1 B-type isoform X11

      UniProtKB/TrEMBL
      F7GTP2
      Conserved Domains (3) summary
      pfam00859
      Location:211 → 463
      CTF_NFI; CTF/NF-I family transcription modulation region
      pfam10524
      Location:11 → 49
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:71 → 175
      MH1; N-terminal Mad Homology 1 (MH1) domain

    14. XM_028835167.1 → XP_028691000.1  nuclear factor 1 B-type isoform X12

      UniProtKB/TrEMBL
      F6PSV2
      Related
      ENSMMUP00000041484.2, ENSMMUT00000056943.2
      Conserved Domains (4) summary
      pfam00859
      Location:211 → 418
      CTF_NFI; CTF/NF-I family transcription modulation region
      pfam10524
      Location:11 → 49
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:71 → 175
      MH1; N-terminal Mad Homology 1 (MH1) domain
      cl30265
      Location:387 → 477
      PRK09579; multidrug efflux protein; Reviewed

    15. XM_015117690.2 → XP_014973176.1  nuclear factor 1 B-type isoform X15

      Conserved Domains (1) summary
      pfam00859
      Location:1 → 237
      CTF_NFI; CTF/NF-I family transcription modulation region
    Nucleotide Protein
    Heading Accession and Version

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