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    NCBP2 nuclear cap binding protein subunit 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708260, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NCBP2provided by VGNC
    Official Full Name
    nuclear cap binding protein subunit 2provided by VGNC
    Primary source
    VGNC:VGNC:75139
    Locus tag
    EGK_12250
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See NCBP2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (1691528..1697918, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (203621624..203627945, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene p21 (RAC1) activated kinase 2 Neighboring gene SUMO specific peptidase 5 Neighboring gene uncharacterized LOC114676196 Neighboring gene NCBP2 antisense 2 (head to head) Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Z

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear cap binding complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear cap-binding protein subunit 2
    Names
    nuclear cap binding protein subunit 2, 20kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265847.1 → NP_001252776.1  nuclear cap-binding protein subunit 2

      See identical proteins and their annotated locations for NP_001252776.1

      Status: PROVISIONAL

      Source sequence(s)
      JV045570
      UniProtKB/TrEMBL
      A0A8J8XLE3, G7MKG7, H9EMC9
      Conserved Domains (1) summary
      cd12240
      Location:42 → 119
      RRM_NCBP2; RNA recognition motif (RRM) found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      1691528..1697918 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015132569.1 → XP_014988055.1  nuclear cap-binding protein subunit 2 isoform X2

      Conserved Domains (1) summary
      cl17169
      Location:1 → 49
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_015132568.2 → XP_014988054.1  nuclear cap-binding protein subunit 2 isoform X1

      Conserved Domains (1) summary
      cl17169
      Location:41 → 66
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_028843283.1 → XP_028699116.1  nuclear cap-binding protein subunit 2 isoform X2

      Conserved Domains (1) summary
      cl17169
      Location:1 → 49
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_015132571.1 → XP_014988057.1  nuclear cap-binding protein subunit 2 isoform X2

      Conserved Domains (1) summary
      cl17169
      Location:1 → 49
      RRM_SF; RNA recognition motif (RRM) superfamily

    5. XM_015132572.2 → XP_014988058.1  nuclear cap-binding protein subunit 2 isoform X2

      Conserved Domains (1) summary
      cl17169
      Location:1 → 49
      RRM_SF; RNA recognition motif (RRM) superfamily

    6. XM_028843284.1 → XP_028699117.1  nuclear cap-binding protein subunit 2 isoform X3

    RNA

    1. XR_001443331.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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