U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PRDM5 PR/SET domain 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708790, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PRDM5provided by VGNC
    Official Full Name
    PR/SET domain 5provided by VGNC
    Primary source
    VGNC:VGNC:100264
    See related
    Ensembl:ENSMMUG00000003249
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PRDM5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (118537387..118760986, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (119528710..119750399, complement)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678175 Neighboring gene uncharacterized LOC106998481 Neighboring gene uncharacterized LOC106998482 Neighboring gene U6 spliceosomal RNA Neighboring gene neuron derived neurotrophic factor Neighboring gene uncharacterized LOC114678389 Neighboring gene TNFAIP3 interacting protein 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    PR domain zinc finger protein 5
    XP_014994632.2
    XP_014994633.2
    XP_014994635.2
    XP_014994636.2
    XP_014994637.2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      118537387..118760986 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015139147.2 → XP_014994633.2  PR domain zinc finger protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QTS8, G7MRW1
      Related
      ENSMMUP00000051458.2, ENSMMUT00000073119.2
      Conserved Domains (3) summary
      COG5048
      Location:169 → 589
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:460 → 480
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19190
      Location:2 → 128
      PR-SET_PRDM5; PR-SET domain found in PR domain zinc finger protein 5 (PRDM5) and similar proteins

    2. XM_015139146.2 → XP_014994632.2  PR domain zinc finger protein 5 isoform X1

      UniProtKB/TrEMBL
      F7DJF1, G7MRW1
      Related
      ENSMMUP00000004331.4, ENSMMUT00000004597.4
      Conserved Domains (3) summary
      COG5048
      Location:262 → 620
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:491 → 511
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00856
      Location:20 → 123
      SET; SET domain

    3. XM_015139151.2 → XP_014994637.2  PR domain zinc finger protein 5 isoform X5

      Conserved Domains (3) summary
      COG5048
      Location:145 → 337
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:319 → 339
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19190
      Location:2 → 128
      PR-SET_PRDM5; PR-SET domain found in PR domain zinc finger protein 5 (PRDM5) and similar proteins

    4. XM_015139150.2 → XP_014994636.2  PR domain zinc finger protein 5 isoform X4

      Related
      ENSMMUP00000034847.3, ENSMMUT00000041839.3
      Conserved Domains (4) summary
      COG5048
      Location:264 → 423
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:350 → 370
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19190
      Location:2 → 128
      PR-SET_PRDM5; PR-SET domain found in PR domain zinc finger protein 5 (PRDM5) and similar proteins
      cd20908
      Location:172 → 220
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    5. XM_015139149.2 → XP_014994635.2  PR domain zinc finger protein 5 isoform X3

      Conserved Domains (4) summary
      COG5048
      Location:264 → 423
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:459 → 540
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:463 → 483
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00856
      Location:20 → 123
      SET; SET domain

    RNA

    1. XR_003729770.1 RNA Sequence

    2. XR_001444950.2 RNA Sequence

    3. XR_003729771.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.