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    YBX1 Y-box binding protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700140, updated on 18-Sep-2024

    Summary

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    Official Symbol
    YBX1provided by VGNC
    Official Full Name
    Y-box binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:100189
    See related
    Ensembl:ENSMMUG00000013136
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See YBX1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (181854452..181874621, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (42022748..42042932)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene prolyl 3-hydroxylase 1 Neighboring gene claudin 19 Neighboring gene uncharacterized LOC114672765 Neighboring gene peptidylprolyl isomerase H Neighboring gene coiled-coil domain containing 30 Neighboring gene succinate dehydrogenase cytochrome b560 subunit, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclease-sensitive element-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      181854452..181874621 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015137151.2 → XP_014992637.1  nuclease-sensitive element-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QC00
      Conserved Domains (1) summary
      cd04458
      Location:61 → 90
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

    2. XM_015137147.2 → XP_014992633.1  nuclease-sensitive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QC00, F6ZFN1
      Related
      ENSMMUP00000017257.4, ENSMMUT00000018430.4
      Conserved Domains (1) summary
      pfam00313
      Location:59 → 128
      CSD; 'Cold-shock' DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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