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    TPCN1 two pore segment channel 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712964, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TPCN1provided by VGNC
    Official Full Name
    two pore segment channel 1provided by VGNC
    Primary source
    VGNC:VGNC:79117
    See related
    Ensembl:ENSMMUG00000004435
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TPCN1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (112934521..113010507)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (113253170..113331889)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene RBPJ interacting and tubulin associated 1 Neighboring gene IQ motif containing D Neighboring gene solute carrier family 8 member B1 Neighboring gene phospholipase B domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables voltage-gated channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two pore calcium channel protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      112934521..113010507
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002798780.3 → XP_002798826.2  two pore calcium channel protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q1J1, G7N5Q0
      Related
      ENSMMUP00000041903.2, ENSMMUT00000060274.2
      Conserved Domains (1) summary
      pfam00520
      Location:440 → 690
      Ion_trans; Ion transport protein

    2. XM_028829939.1 → XP_028685772.1  two pore calcium channel protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q1J1, G7N5Q0
      Related
      ENSMMUP00000005915.4, ENSMMUT00000006288.4
      Conserved Domains (1) summary
      pfam00520
      Location:440 → 690
      Ion_trans; Ion transport protein

    3. XM_015152882.2 → XP_015008368.2  two pore calcium channel protein 1 isoform X3

      UniProtKB/TrEMBL
      G7N5Q0
      Conserved Domains (1) summary
      pfam00520
      Location:372 → 622
      Ion_trans; Ion transport protein

    4. XM_015152881.2 → XP_015008367.2  two pore calcium channel protein 1 isoform X2

      UniProtKB/TrEMBL
      G7N5Q0
      Conserved Domains (1) summary
      pfam00520
      Location:414 → 664
      Ion_trans; Ion transport protein

    RNA

    1. XR_001448220.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials