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    HSDL2 hydroxysteroid dehydrogenase like 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707233, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HSDL2provided by VGNC
    Official Full Name
    hydroxysteroid dehydrogenase like 2provided by VGNC
    Primary source
    VGNC:VGNC:73414
    Locus tag
    EGK_07421
    See related
    Ensembl:ENSMMUG00000011654
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HSDL2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (30355979..30437574, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (26926340..27007759, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene KIAA1958 Neighboring gene uncharacterized LOC106993647 Neighboring gene 60S ribosomal protein L38 pseudogene Neighboring gene polypyrimidine tract binding protein 3 Neighboring gene 60S ribosomal protein L29 pseudogene Neighboring gene sushi domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human. Magness CL, et al. Genome Biol, 2005. PMID 15998449, Free PMC Article
    2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    3. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hydroxysteroid dehydrogenase-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001199126.2 → NP_001186055.1  hydroxysteroid dehydrogenase-like protein 2

      See identical proteins and their annotated locations for NP_001186055.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000140
      UniProtKB/TrEMBL
      A0A1D5R7B8, A0A5F8A7T1, A0A8J8XYT1, G7NEH8
      Related
      ENSMMUP00000072970.1, ENSMMUT00000089048.1
      Conserved Domains (2) summary
      cd09762
      Location:8 → 248
      HSDL2_SDR_c; human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs
      pfam02036
      Location:319 → 412
      SCP2; SCP-2 sterol transfer family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      30355979..30437574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015116997.2 → XP_014972483.1  hydroxysteroid dehydrogenase-like protein 2 isoform X2

      UniProtKB/TrEMBL
      F7HDU5
      Conserved Domains (3) summary
      cd09762
      Location:8 → 248
      HSDL2_SDR_c; human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs
      pfam00106
      Location:12 → 210
      adh_short; short chain dehydrogenase
      pfam02036
      Location:290 → 362
      SCP2; SCP-2 sterol transfer family

    2. XM_028834302.1 → XP_028690135.1  hydroxysteroid dehydrogenase-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1D5R7B8, A0A5F8AU01
      Related
      ENSMMUP00000080593.1, ENSMMUT00000099903.1
      Conserved Domains (2) summary
      cd09762
      Location:8 → 248
      HSDL2_SDR_c; human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs
      cl01225
      Location:319 → 382
      SCP2; SCP-2 sterol transfer family
    Nucleotide Protein
    Heading Accession and Version

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