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    CDAN1 codanin 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708838, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CDAN1provided by VGNC
    Official Full Name
    codanin 1provided by VGNC
    Primary source
    VGNC:VGNC:70788
    See related
    Ensembl:ENSMMUG00000015123
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CDAN1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (19240885..19254372, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (19160545..19174014, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E-binding protein 2 pseudogene Neighboring gene StAR related lipid transfer domain containing 9 Neighboring gene small nucleolar RNA U13 Neighboring gene tau tubulin kinase 2 Neighboring gene keratin, type II cytoskeletal 8 pseudogene Neighboring gene farnesyl pyrophosphate synthase pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    codanin-1
    Names
    congenital dyserythropoietic anemia, type I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194310.2 → NP_001181239.1  codanin-1

      Status: VALIDATED

      Source sequence(s)
      JU480796, QNVO02000411
      UniProtKB/TrEMBL
      F6UL93
      Related
      ENSMMUP00000019831.4, ENSMMUT00000021207.4
      Conserved Domains (1) summary
      pfam15296
      Location:784 → 899
      Codanin-1_C; Codanin-1 C-terminus

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      19240885..19254372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015141907.2 → XP_014997393.2  codanin-1 isoform X3

      UniProtKB/TrEMBL
      F6UL93
      Conserved Domains (2) summary
      PHA03247
      Location:63 → 306
      PHA03247; large tegument protein UL36; Provisional
      pfam15296
      Location:788 → 903
      Codanin-1_C; Codanin-1 C-terminus

    2. XM_028850372.1 → XP_028706205.1  codanin-1 isoform X2

      UniProtKB/TrEMBL
      F6UL93
      Conserved Domains (2) summary
      PTZ00449
      Location:76 → 304
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam15296
      Location:795 → 910
      Codanin-1_C; Codanin-1 C-terminus

    3. XM_028850371.1 → XP_028706204.1  codanin-1 isoform X1

      UniProtKB/TrEMBL
      F6UL93
      Conserved Domains (2) summary
      PHA03247
      Location:71 → 314
      PHA03247; large tegument protein UL36; Provisional
      pfam15296
      Location:796 → 911
      Codanin-1_C; Codanin-1 C-terminus

    RNA

    1. XR_003730925.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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