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    PKD1L2 polycystin-1-like protein 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717465, updated on 5-Mar-2024

    Summary

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    Gene symbol
    PKD1L2
    Gene description
    polycystin-1-like protein 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human all
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    Genomic context

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    See PKD1L2 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (68129394..68237549, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (65762629..65871837, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene chromosome 20 C16orf46 homolog Neighboring gene uncharacterized LOC114674390 Neighboring gene U6 spliceosomal RNA Neighboring gene glycine cleavage system protein H Neighboring gene uncharacterized LOC106995098 Neighboring gene beta-carotene oxygenase 1 Neighboring gene gigaxonin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in detection of mechanical stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polycystic kidney disease protein 1-like 2
    Names
    polycystin 1 like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      68129394..68237549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015126689.2 → XP_014982175.2  polycystic kidney disease protein 1-like 2 isoform X1

      UniProtKB/TrEMBL
      G7NR54
      Conserved Domains (5) summary
      cd00037
      Location:39 → 154
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      smart00303
      Location:1280 → 1319
      GPS; G-protein-coupled receptor proteolytic site domain
      cd01752
      Location:1390 → 1509
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      pfam08016
      Location:1987 → 2407
      PKD_channel; Polycystin cation channel
      pfam02140
      Location:169 → 251
      Gal_Lectin; Galactose binding lectin domain

    2. XM_015126690.2 → XP_014982176.2  polycystic kidney disease protein 1-like 2 isoform X2

      Conserved Domains (2) summary
      cd00037
      Location:39 → 154
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      pfam02140
      Location:169 → 251
      Gal_Lectin; Galactose binding lectin domain
    Nucleotide Protein
    Heading Accession and Version

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