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    VPS13B vacuolar protein sorting 13 homolog B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704477, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VPS13Bprovided by VGNC
    Official Full Name
    vacuolar protein sorting 13 homolog Bprovided by VGNC
    Primary source
    VGNC:VGNC:79339
    See related
    Ensembl:ENSMMUG00000022186
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See VPS13B in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    67
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (99285826..100148596)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (97679623..98597240)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 4B pseudogene Neighboring gene odd-skipped related transciption factor 2 Neighboring gene insulin-like growth factor 2 mRNA-binding protein 2 pseudogene Neighboring gene male-specific lethal 3 homolog pseudogene Neighboring gene uncharacterized LOC114680308 Neighboring gene microRNA mir-599 Neighboring gene microRNA mir-875 Neighboring gene mitochondrial proton/calcium exchanger protein pseudogene Neighboring gene EF-hand calcium-binding domain-containing protein 14 pseudogene Neighboring gene cytochrome c oxidase subunit 6C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 13B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      99285826..100148596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001096361.4 → XP_001096361.3  vacuolar protein sorting-associated protein 13B isoform X1

      UniProtKB/TrEMBL
      F6ZMT6, F6ZMU5
      Conserved Domains (4) summary
      pfam06650
      Location:2632 → 2824
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3585 → 3731
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam09333
      Location:3733 → 3842
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    2. XM_015145769.2 → XP_015001255.2  vacuolar protein sorting-associated protein 13B isoform X1

      UniProtKB/TrEMBL
      F6ZMT6, F6ZMU5
      Conserved Domains (4) summary
      pfam06650
      Location:2632 → 2824
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3585 → 3731
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam09333
      Location:3733 → 3842
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    3. XM_001096476.4 → XP_001096476.3  vacuolar protein sorting-associated protein 13B isoform X3

      UniProtKB/TrEMBL
      A0A5F8A3V8, F6ZMT6
      Related
      ENSMMUP00000071591.1, ENSMMUT00000084037.1
      Conserved Domains (4) summary
      pfam06650
      Location:2607 → 2799
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3560 → 3706
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam09333
      Location:3708 → 3817
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    4. XM_015145774.2 → XP_015001260.2  vacuolar protein sorting-associated protein 13B isoform X4

      UniProtKB/TrEMBL
      F6ZMT6
      Related
      ENSMMUP00000029209.4, ENSMMUT00000031207.4
      Conserved Domains (4) summary
      pfam06650
      Location:2606 → 2798
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3559 → 3705
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam09333
      Location:3707 → 3816
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    5. XM_015145773.2 → XP_015001259.2  vacuolar protein sorting-associated protein 13B isoform X2

      UniProtKB/TrEMBL
      F6ZMT6
      Conserved Domains (4) summary
      pfam06650
      Location:2631 → 2823
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3584 → 3730
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam09333
      Location:3732 → 3841
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    6. XM_028852793.1 → XP_028708626.1  vacuolar protein sorting-associated protein 13B isoform X6

      Conserved Domains (1) summary
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    7. XM_028852794.1 → XP_028708627.1  vacuolar protein sorting-associated protein 13B isoform X7

      Conserved Domains (1) summary
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    8. XM_015145777.2 → XP_015001263.1  vacuolar protein sorting-associated protein 13B isoform X9

      UniProtKB/TrEMBL
      H9FHQ5
      Conserved Domains (1) summary
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    9. XM_028852795.1 → XP_028708628.1  vacuolar protein sorting-associated protein 13B isoform X8

      UniProtKB/TrEMBL
      H9FHQ5
      Conserved Domains (1) summary
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    10. XM_015145778.2 → XP_015001264.1  vacuolar protein sorting-associated protein 13B isoform X10

      Conserved Domains (1) summary
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    11. XM_015145780.2 → XP_015001266.1  vacuolar protein sorting-associated protein 13B isoform X11

      Conserved Domains (1) summary
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    12. XM_015145770.2 → XP_015001256.2  vacuolar protein sorting-associated protein 13B isoform X1

      UniProtKB/TrEMBL
      F6ZMT6, F6ZMU5
      Related
      ENSMMUP00000029208.4, ENSMMUT00000031206.4
      Conserved Domains (4) summary
      pfam06650
      Location:2632 → 2824
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3585 → 3731
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam09333
      Location:3733 → 3842
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    13. XM_015145771.2 → XP_015001257.2  vacuolar protein sorting-associated protein 13B isoform X1

      UniProtKB/TrEMBL
      F6ZMT6, F6ZMU5
      Related
      ENSMMUP00000067898.1, ENSMMUT00000080184.1
      Conserved Domains (4) summary
      pfam06650
      Location:2632 → 2824
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3585 → 3731
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam09333
      Location:3733 → 3842
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 94
      Chorein_N; N-terminal region of Chorein or VPS13

    14. XM_015145776.2 → XP_015001262.2  vacuolar protein sorting-associated protein 13B isoform X5

      UniProtKB/TrEMBL
      A0A5F8ABR0
      Related
      ENSMMUP00000075373.1, ENSMMUT00000109555.1
      Conserved Domains (3) summary
      pfam06650
      Location:2227 → 2419
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3180 → 3326
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam09333
      Location:3328 → 3437
      ATG_C; Autophagy-related protein C terminal domain

    RNA

    1. XR_001446796.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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