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    HDX highly divergent homeobox [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710427, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HDXprovided by VGNC
    Official Full Name
    highly divergent homeoboxprovided by VGNC
    Primary source
    VGNC:VGNC:73242
    Locus tag
    EGK_20694
    See related
    Ensembl:ENSMMUG00000020536
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HDX in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (81163648..81356331, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (78380079..78576602, complement)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene cylicin 1 Neighboring gene ribosomal protein S6 kinase A6 Neighboring gene protein SET-like Neighboring gene putative hydrolase RBBP9 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    highly divergent homeobox

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      81163648..81356331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028842548.1 → XP_028698381.1  highly divergent homeobox isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q1P6, A0A5F7ZPB4, A0A663D6P3, A0A8J8YCE8, F7D8D4, G7NSD5
      Related
      ENSMMUP00000041958.2, ENSMMUT00000073518.2
      Conserved Domains (2) summary
      smart00389
      Location:4 → 59
      HOX; Homeodomain
      cd00086
      Location:439 → 495
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    2. XM_015127740.2 → XP_014983226.1  highly divergent homeobox isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q1P6, A0A5F7ZPB4, A0A663D6P3, A0A8J8YCE8, F7D8D4, G7NSD5
      Conserved Domains (2) summary
      smart00389
      Location:4 → 59
      HOX; Homeodomain
      cd00086
      Location:439 → 495
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    3. XM_015127741.2 → XP_014983227.1  highly divergent homeobox isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZPB4
      Conserved Domains (1) summary
      cd00086
      Location:381 → 437
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    4. XM_028842549.1 → XP_028698382.1  highly divergent homeobox isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZPB4, A0A5F8AJ71
      Related
      ENSMMUP00000077066.1, ENSMMUT00000092976.1
      Conserved Domains (2) summary
      smart00389
      Location:4 → 59
      HOX; Homeodomain
      cd00086
      Location:421 → 477
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    RNA

    1. XR_003726235.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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