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    TRIM42 tripartite motif containing 42 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715465, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRIM42provided by VGNC
    Official Full Name
    tripartite motif containing 42provided by VGNC
    Primary source
    VGNC:VGNC:79167
    Locus tag
    EGK_12049
    See related
    Ensembl:ENSMMUG00000021392
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM42 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (42838933..42861414)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (161178322..161200812, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene calsyntenin 2 Neighboring gene uncharacterized LOC114676256 Neighboring gene uncharacterized LOC106997094 Neighboring gene uncharacterized LOC106997084 Neighboring gene solute carrier family 25 member 36

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 42

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      42838933..42861414
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001113172.4 → XP_001113172.3  tripartite motif-containing protein 42

      UniProtKB/TrEMBL
      F7FDB5, G7MJM5
      Related
      ENSMMUP00000028181.4, ENSMMUT00000030112.4
      Conserved Domains (4) summary
      smart00502
      Location:369 → 452
      BBC; B-Box C-terminal domain
      cd00063
      Location:612 → 698
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00643
      Location:285 → 326
      zf-B_box; B-box zinc finger
      cd16578
      Location:143 → 193
      RING-HC_TRIM42_C-III; RING finger, HC subclass, found in tripartite motif-containing protein 42 (TRIM42) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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