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    SYNGR4 synaptogyrin 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717913, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SYNGR4provided by VGNC
    Official Full Name
    synaptogyrin 4provided by VGNC
    Primary source
    VGNC:VGNC:78070
    Locus tag
    EGK_10835
    See related
    Ensembl:ENSMMUG00000013070
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SYNGR4 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (48348600..48368021)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (43717678..43729263)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene outer dynein arm docking complex subunit 1 Neighboring gene epithelial membrane protein 3 Neighboring gene transmembrane protein 143 Neighboring gene KDEL endoplasmic reticulum protein retention receptor 1 Neighboring gene glutamate ionotropic receptor NMDA type subunit 2D Neighboring gene glutamate rich WD repeat containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in neuromuscular junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptogyrin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194830.3 → NP_001181759.1  synaptogyrin-4

      See identical proteins and their annotated locations for NP_001181759.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000225
      UniProtKB/TrEMBL
      A0A8J8YFU3, F7H5G6, G7NNP6
      Related
      ENSMMUP00000017168.2, ENSMMUT00000018337.4
      Conserved Domains (1) summary
      pfam01284
      Location:18 → 163
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      48348600..48368021
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028838488.1 → XP_028694321.1  synaptogyrin-4 isoform X3

      Conserved Domains (1) summary
      pfam01284
      Location:18 → 111
      MARVEL; Membrane-associating domain

    2. XM_015124377.2 → XP_014979863.1  synaptogyrin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YFU3, F7H5G6, G7NNP6
      Conserved Domains (1) summary
      pfam01284
      Location:18 → 163
      MARVEL; Membrane-associating domain

    3. XM_015124378.2 → XP_014979864.1  synaptogyrin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YFU3, F7H5G6, G7NNP6
      Conserved Domains (1) summary
      pfam01284
      Location:18 → 163
      MARVEL; Membrane-associating domain

    4. XM_001113574.4 → XP_001113574.1  synaptogyrin-4 isoform X1

      See identical proteins and their annotated locations for XP_001113574.1

      UniProtKB/TrEMBL
      A0A8J8YFU3, F7H5G6, G7NNP6
      Conserved Domains (1) summary
      pfam01284
      Location:18 → 163
      MARVEL; Membrane-associating domain

    5. XM_028838487.1 → XP_028694320.1  synaptogyrin-4 isoform X2

      Conserved Domains (1) summary
      pfam01284
      Location:27 → 158
      MARVEL; Membrane-associating domain
    Nucleotide Protein
    Heading Accession and Version

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