U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PAPLN papilin, proteoglycan like sulfated glycoprotein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696394, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PAPLNprovided by VGNC
    Official Full Name
    papilin, proteoglycan like sulfated glycoproteinprovided by VGNC
    Primary source
    VGNC:VGNC:75647
    See related
    Ensembl:ENSMMUG00000020195
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PAPLN in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (135363257..135401689)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (135605718..135644346)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene presenilin 1 Neighboring gene uncharacterized LOC106999487 Neighboring gene NUMB endocytic adaptor protein Neighboring gene uncharacterized LOC114679597

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    papilin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      135363257..135401689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028851640.1 → XP_028707473.1  papilin isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZUC6, F6WT57
      Related
      ENSMMUP00000026588.4, ENSMMUT00000028412.4
      Conserved Domains (8) summary
      smart00209
      Location:29 → 80
      TSP1; Thrombospondin type 1 repeats
      smart00410
      Location:1132 → 1212
      IG_like; Immunoglobulin like
      pfam05986
      Location:183 → 298
      ADAM_spacer1; ADAM-TS Spacer 1
      pfam16626
      Location:807 → 898
      Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
      pfam00014
      Location:746 → 797
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam07679
      Location:1042 → 1109
      I-set; Immunoglobulin I-set domain
      pfam08686
      Location:1228 → 1260
      PLAC; PLAC (protease and lacunin) domain
      cl11960
      Location:907 → 971
      Ig; Immunoglobulin domain

    2. XM_028851642.1 → XP_028707475.1  papilin isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZUC6
      Conserved Domains (7) summary
      smart00209
      Location:29 → 80
      TSP1; Thrombospondin type 1 repeats
      smart00409
      Location:1132 → 1179
      IG; Immunoglobulin
      pfam05986
      Location:183 → 298
      ADAM_spacer1; ADAM-TS Spacer 1
      pfam16626
      Location:807 → 898
      Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
      pfam00014
      Location:746 → 797
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam07679
      Location:1042 → 1109
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:907 → 971
      Ig; Immunoglobulin domain

    3. XM_028851639.1 → XP_028707472.1  papilin isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZUC6, F6WT57
      Related
      ENSMMUP00000074666.1, ENSMMUT00000104329.1
      Conserved Domains (8) summary
      smart00209
      Location:29 → 80
      TSP1; Thrombospondin type 1 repeats
      smart00410
      Location:1132 → 1212
      IG_like; Immunoglobulin like
      pfam05986
      Location:183 → 298
      ADAM_spacer1; ADAM-TS Spacer 1
      pfam16626
      Location:807 → 898
      Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
      pfam00014
      Location:746 → 797
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam07679
      Location:1042 → 1109
      I-set; Immunoglobulin I-set domain
      pfam08686
      Location:1228 → 1260
      PLAC; PLAC (protease and lacunin) domain
      cl11960
      Location:907 → 971
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.