U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PEX1 peroxisomal biogenesis factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702392, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PEX1provided by VGNC
    Official Full Name
    peroxisomal biogenesis factor 1provided by VGNC
    Primary source
    VGNC:VGNC:81736
    See related
    Ensembl:ENSMMUG00000040007
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PEX1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (113614912..113657168)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (117770866..117798413, complement)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene EF-hand calcium-binding domain-containing protein 1-like Neighboring gene RNA binding motif protein 48 Neighboring gene uncharacterized LOC114676988 Neighboring gene GATA zinc finger domain containing 1 Neighboring gene endogenous retrovirus group W member 1, envelope Neighboring gene mitochondrial intermembrane space import and assembly protein 40 pseudogene Neighboring gene transmembrane BAX inhibitor motif containing 7

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into peroxisome matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    peroxisome biogenesis factor 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      113614912..113657168
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028846065.1 → XP_028701898.1  peroxisome biogenesis factor 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5Q9M5
      Conserved Domains (1) summary
      TIGR01243
      Location:387 → 857
      CDC48; AAA family ATPase, CDC48 subfamily

    2. XM_028846060.1 → XP_028701893.1  peroxisome biogenesis factor 1 isoform X1

      UniProtKB/TrEMBL
      G7MLW6, H9FVS2
      Related
      ENSMMUP00000044743.2, ENSMMUT00000058402.2
      Conserved Domains (3) summary
      TIGR01243
      Location:595 → 1065
      CDC48; AAA family ATPase, CDC48 subfamily
      pfam09263
      Location:19 → 98
      PEX-2N; Peroxisome biogenesis factor 1, N-terminal
      pfam09262
      Location:104 → 179
      PEX-1N; Peroxisome biogenesis factor 1, N-terminal

    3. XM_028846066.1 → XP_028701899.1  peroxisome biogenesis factor 1 isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZWY0
      Conserved Domains (3) summary
      TIGR01243
      Location:595 → 1010
      CDC48; AAA family ATPase, CDC48 subfamily
      pfam09263
      Location:19 → 98
      PEX-2N; Peroxisome biogenesis factor 1, N-terminal
      pfam09262
      Location:104 → 179
      PEX-1N; Peroxisome biogenesis factor 1, N-terminal

    4. XM_015134235.2 → XP_014989721.2  peroxisome biogenesis factor 1 isoform X5

      Conserved Domains (2) summary
      TIGR01243
      Location:273 → 743
      CDC48; AAA family ATPase, CDC48 subfamily
      pfam09263
      Location:19 → 91
      PEX-2N; Peroxisome biogenesis factor 1, N-terminal

    5. XM_028846063.1 → XP_028701896.1  peroxisome biogenesis factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5Q6D9, H9FVS2
      Conserved Domains (3) summary
      TIGR01243
      Location:560 → 1030
      CDC48; AAA family ATPase, CDC48 subfamily
      pfam09263
      Location:9 → 63
      PEX-2N; Peroxisome biogenesis factor 1, N-terminal
      pfam09262
      Location:69 → 144
      PEX-1N; Peroxisome biogenesis factor 1, N-terminal

    6. XM_028846062.1 → XP_028701895.1  peroxisome biogenesis factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5Q6D9, H9FVS2
      Conserved Domains (3) summary
      TIGR01243
      Location:560 → 1030
      CDC48; AAA family ATPase, CDC48 subfamily
      pfam09263
      Location:9 → 63
      PEX-2N; Peroxisome biogenesis factor 1, N-terminal
      pfam09262
      Location:69 → 144
      PEX-1N; Peroxisome biogenesis factor 1, N-terminal

    7. XM_028846064.1 → XP_028701897.1  peroxisome biogenesis factor 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5Q9M5
      Conserved Domains (1) summary
      TIGR01243
      Location:387 → 857
      CDC48; AAA family ATPase, CDC48 subfamily

    8. XM_028846061.1 → XP_028701894.1  peroxisome biogenesis factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5Q6D9, H9FVS2
      Related
      ENSMMUP00000043605.2, ENSMMUT00000058777.2
      Conserved Domains (3) summary
      TIGR01243
      Location:560 → 1030
      CDC48; AAA family ATPase, CDC48 subfamily
      pfam09263
      Location:9 → 63
      PEX-2N; Peroxisome biogenesis factor 1, N-terminal
      pfam09262
      Location:69 → 144
      PEX-1N; Peroxisome biogenesis factor 1, N-terminal

    RNA

    1. XR_003728267.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.