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    SETD4 SET domain containing 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696003, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SETD4provided by VGNC
    Official Full Name
    SET domain containing 4provided by VGNC
    Primary source
    VGNC:VGNC:77224
    Locus tag
    EGK_13266
    See related
    Ensembl:ENSMMUG00000001125
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SETD4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (10522551..10548348)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (10653544..10678731)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106997252 Neighboring gene carbonyl reductase 1 Neighboring gene uncharacterized LOC106997253 Neighboring gene protein phosphatase inhibitor 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine dimethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-lysine monomethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-lysine trimethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SET domain-containing protein 4
    NP_001253203.1
    XP_014988374.2
    XP_014988375.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266274.1 → NP_001253203.1  SET domain-containing protein 4

      See identical proteins and their annotated locations for NP_001253203.1

      Status: PROVISIONAL

      Source sequence(s)
      JV636226
      UniProtKB/TrEMBL
      A0A8J8XZC5, F6T9W4, G7MMT8, I2CX81
      Related
      ENSMMUP00000071733.1, ENSMMUT00000109134.1
      Conserved Domains (2) summary
      cd19177
      Location:46 → 287
      SET_SETD4; SET domain found in SET domain-containing protein 4 (SETD4) and similar proteins
      pfam09273
      Location:314 → 425
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      10522551..10548348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015132888.2 → XP_014988374.2  SET domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZRQ2
      Related
      ENSMMUP00000068305.1, ENSMMUT00000098776.1
      Conserved Domains (1) summary
      pfam09273
      Location:446 → 557
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    2. XM_015132889.2 → XP_014988375.2  SET domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A5F8A1F6, F6T9W4
      Conserved Domains (1) summary
      pfam09273
      Location:314 → 425
      Rubis-subs-bind; Rubisco LSMT substrate-binding
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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