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    CTCFL CCCTC-binding factor like [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701500, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CTCFLprovided by VGNC
    Official Full Name
    CCCTC-binding factor likeprovided by VGNC
    Primary source
    VGNC:VGNC:71420
    Locus tag
    EGK_02262
    See related
    Ensembl:ENSMMUG00000016802
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CTCFL in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (92667737..92698711, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (6881847..6913088)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670510 Neighboring gene uncharacterized LOC114670626 Neighboring gene uncharacterized LOC114670511 Neighboring gene phosphoenolpyruvate carboxykinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcriptional repressor CTCFL

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      92667737..92698711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001089797.4 → XP_001089797.2  transcriptional repressor CTCFL isoform X1

      UniProtKB/TrEMBL
      A0A1D5R8Q7, F7CYR4
      Related
      ENSMMUP00000056697.2, ENSMMUT00000054474.2
      Conserved Domains (2) summary
      COG5048
      Location:244 → 574
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:348 → 368
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_015148727.2 → XP_015004213.2  transcriptional repressor CTCFL isoform X2

      UniProtKB/TrEMBL
      F7CYR4
      Conserved Domains (2) summary
      COG5048
      Location:241 → 574
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:348 → 368
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_015148729.2 → XP_015004215.2  transcriptional repressor CTCFL isoform X3

      Conserved Domains (2) summary
      COG5048
      Location:3 → 141
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:82 → 102
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_015148730.2 → XP_015004216.2  transcriptional repressor CTCFL isoform X4

      Conserved Domains (2) summary
      sd00017
      Location:139 → 159
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:180 → 204
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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