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    SLITRK3 SLIT and NTRK like family member 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700660, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLITRK3provided by VGNC
    Official Full Name
    SLIT and NTRK like family member 3provided by VGNC
    Primary source
    VGNC:VGNC:77761
    Locus tag
    EGK_11934
    See related
    Ensembl:ENSMMUG00000011050
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SLITRK3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (69777886..69788350, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (129156314..129166725)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene neugrin-like Neighboring gene uncharacterized LOC106997013 Neighboring gene sucrase-isomaltase Neighboring gene butyrylcholinesterase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of synapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of presynapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in GABA-ergic synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SLIT and NTRK-like protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      69777886..69788350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843825.1 → XP_028699658.1  SLIT and NTRK-like protein 3

      UniProtKB/TrEMBL
      A0A663D6C6, A0A8J8YQ26, F7GMP9, G7MJD3
      Conserved Domains (3) summary
      smart00082
      Location:562 → 597
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:81 → 102
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:105 → 161
      LRR_8; Leucine rich repeat

    2. XM_015131687.2 → XP_014987173.1  SLIT and NTRK-like protein 3

      UniProtKB/TrEMBL
      A0A663D6C6, A0A8J8YQ26, F7GMP9, G7MJD3
      Related
      ENSMMUP00000014471.3, ENSMMUT00000015448.4
      Conserved Domains (3) summary
      smart00082
      Location:562 → 597
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:81 → 102
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:105 → 161
      LRR_8; Leucine rich repeat

    3. XM_015131686.2 → XP_014987172.1  SLIT and NTRK-like protein 3

      UniProtKB/TrEMBL
      A0A663D6C6, A0A8J8YQ26, F7GMP9, G7MJD3
      Conserved Domains (3) summary
      smart00082
      Location:562 → 597
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:81 → 102
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:105 → 161
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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