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    MAP1LC3B microtubule associated protein 1 light chain 3 beta [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 695419, updated on 5-Mar-2024

    Summary

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    Gene symbol
    MAP1LC3B
    Gene description
    microtubule associated protein 1 light chain 3 beta
    See related
    Ensembl:ENSMMUG00000050432
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See MAP1LC3B in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (74388317..74400917)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (72182207..72194797)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene F-box protein 31 Neighboring gene uncharacterized LOC114674359 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene zinc finger CCHC-type containing 14 Neighboring gene uncharacterized LOC106995114

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human. Magness CL, et al. Genome Biol, 2005. PMID 15998449, Free PMC Article
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to nitrogen starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in autophagosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    microtubule-associated proteins 1A/1B light chain 3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193625.1 → NP_001180554.1  microtubule-associated proteins 1A/1B light chain 3B

      See identical proteins and their annotated locations for NP_001180554.1

      Status: VALIDATED

      Source sequence(s)
      CO581510
      UniProtKB/TrEMBL
      G7NPG9, I2CT89
      Related
      ENSMMUP00000063934.1, ENSMMUT00000088677.1
      Conserved Domains (1) summary
      cd17235
      Location:5 → 119
      Ubl_ATG8_MAP1LC3B; ubiquitin-like (Ubl) domain found in microtubule associate protein 1 light chain 3B (MAP1LC3B)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      74388317..74400917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015126751.2 → XP_014982237.1  microtubule-associated proteins 1A/1B light chain 3B isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZX57, G7NPG9
      Related
      ENSMMUP00000070247.1, ENSMMUT00000096502.1
      Conserved Domains (1) summary
      cd17235
      Location:5 → 119
      Ubl_ATG8_MAP1LC3B; ubiquitin-like (Ubl) domain found in microtubule associate protein 1 light chain 3B (MAP1LC3B)
    Nucleotide Protein
    Heading Accession and Version

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